RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 LYSMD1Q96S90 227 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 RAB23Q9ULC3 237 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 RUVBL1Q9Y265 456 aaKnown RBP11.32□□□□□ -0.6
VPS4A-201ENST00000254950 INVSQ9Y283 1065 aa11.32□□□□□ -0.6
VPS4A-201ENST00000254950 TRIM38O00635 465 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 TLX1P31314 330 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 HNRNPH1P31943 449 aaKnown RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 P2RY2P41231 377 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 KIR3DL1P43629 444 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 SMAD4Q13485 552 aaKnown RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 SLC44A4Q53GD3 710 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 SYCE2Q6PIF2 218 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 RFLNAQ6ZTI6 216 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 DHDDSQ86SQ9 333 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 ULK2Q8IYT8 1036 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 TAGAPQ8N103 731 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 NELL1Q92832 810 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 SLC22A18Q96BI1 424 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 PPM1HQ9ULR3 514 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 OR1A2Q9Y585 309 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 OR1F1O43749 312 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 ATP6V1G2O95670 118 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 ANXA4P09525 319 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 LHCGRP22888 699 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 NTSP30990 170 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 HMGCS1Q01581 520 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 FAM46DQ8NEK8 389 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 FGF14Q92915 247 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 FOXJ1Q92949 421 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 ITCHQ96J02 903 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 MCCC1Q96RQ3 725 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 HOPXQ9BPY8 73 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 TMEM245Q9H330 911 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 FZD3Q9NPG1 666 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 EVA1BQ9NVM1 165 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 TRPC4Q9UBN4 977 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 PACSIN3Q9UKS6 424 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 PIPSLA2A3N6 862 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 LRRC14BA6NHZ5 514 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 FZD6O60353 706 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 GNSP15586 552 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 VHLP40337 213 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 SLC7A2P52569 658 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 ADARP55265 1226 aaKnown RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 DCDC1P59894 354 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 IRX1P78414 480 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-201ENST00000254950 ZNF438Q7Z4V0 828 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 DDHD1Q8NEL9 900 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 VPS33AQ96AX1 596 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 L3HYPDHQ96EM0 354 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 MOCOSQ96EN8 888 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 PANX1Q96RD7 426 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 RAD21L1Q9H4I0 556 aa11.31□□□□□ -0.6
VPS4A-201ENST00000254950 RFXANKO14593 260 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 ZNF217O75362 1048 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 RASSF9O75901 435 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 ANXA6P08133 673 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 HNRNPA2B1P22626 353 aaKnown RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 MFSD4BQ5TF39 518 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 ANXA8L1Q5VT79 327 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 ZFP1Q6P2D0 407 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 PAOXQ6QHF9 649 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 CYP2R1Q6VVX0 501 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 NET1Q7Z628 596 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 CLEC14AQ86T13 490 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 C12orf40Q86WS4 652 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 DSELQ8IZU8 1212 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 OR2T34Q8NGX1 318 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 DNASE1L2Q92874 299 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 ISL2Q96A47 359 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 PPCDCQ96CD2 204 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 UBXN10Q96LJ8 280 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 KCNA7Q96RP8 456 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 SLC12A9Q9BXP2 914 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 HMX2A2RU54 273 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 MOSPD3O75425 235 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 BMP10O95393 424 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 IFNA14P01570 189 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 CCR8P51685 355 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 RPS14P62263 151 aaKnown RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 GALNT1Q10472 559 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 VPS26BQ4G0F5 336 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 CTSL3PQ5NE16 218 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 CCNYL2Q5T2Q4 361 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 CPTPQ5TA50 214 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 GLB1L3Q8NCI6 653 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-201ENST00000254950 ZFP28Q8NHY6 868 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 FIG4Q92562 907 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 GORASP1Q9BQQ3 440 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 TBCDQ9BTW9 1192 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 HDAC8Q9BY41 377 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 RMI1Q9H9A7 625 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 PREBQ9HCU5 417 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 TAS2R1Q9NYW7 299 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 KIF17Q9P2E2 1029 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 PRSS21Q9Y6M0 314 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 MANBAO00462 879 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 NUAK1O60285 661 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 NTRK1P04629 796 aa11.3□□□□□ -0.6
VPS4A-201ENST00000254950 SPIDRQ14159 915 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms