RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 POLR1EQ9GZS1 481 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 XPNPEP1Q9NQW7 623 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 NARFQ9UHQ1 456 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 KLK4Q9Y5K2 254 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 A0A087WZ62 844 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SLC43A1O75387 559 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 LALBAP00709 142 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ZDHHC11BP0C7U3 371 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ORC1Q13415 861 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 LAPTM5Q13571 262 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CBWD6Q4V339 395 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CBWD3Q5JTY5 395 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CBWD5Q5RIA9 395 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 LRIF1Q5T3J3 769 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 USP45Q70EL2 814 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 LGI2Q8N0V4 545 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 EID2Q8N6I1 236 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SELENOMQ8WWX9 145 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GAL3ST3Q96A11 431 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 GFM1Q96RP9 751 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 TTYH2Q9BSA4 534 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ALG9Q9H6U8 611 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 TREM1Q9NP99 234 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 AGPAT4Q9NRZ5 378 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CD163L1Q9NR16 1453 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 C19orf81C9J6K1 198 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 RSL1D1O76021 490 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 H2AFB2P0C5Z0 115 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 LHCGRP22888 699 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ECHS1P30084 290 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 CBX5P45973 191 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 STT3AP46977 705 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 RPS3AP61247 264 aaKnown RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF33BQ06732 778 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 NOMO2Q5JPE7 1267 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 NOTUMQ6P988 496 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 OR5H6Q8NGV6 325 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 LRRC58Q96CX6 371 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 APBA2Q99767 749 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 OPA3Q9H6K4 179 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 POPDC2Q9HBU9 364 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 SLC22A11Q9NSA0 550 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 HPF1Q9NWY4 346 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF175Q9Y473 711 aa4.59□□□□□ -1.67
SCN1A-220ENST00000641603 PCYT1BQ9Y5K3 369 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-220ENST00000641603 TCRBV3S1A0A5B6 114 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 FAM155AB1AL88 458 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 IFNA10P01566 189 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 TACSTD2P09758 323 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 ODC1P11926 461 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 NELFEP18615 380 aaKnown RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 KELP23276 732 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 AZGP1P25311 298 aaKnown RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 VEGFCP49767 419 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 UBXN2AP68543 259 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 TCP10Q12799 353 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 POU4F2Q12837 409 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 MPP2Q14168 576 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 SGO1Q5FBB7 561 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 DNAJC14Q6Y2X3 702 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 CHMP1BQ7LBR1 199 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 NLGN1Q8N2Q7 840 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 PHF21BQ96EK2 531 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 ZDHHC15Q96MV8 337 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 FUZQ9BT04 418 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 MECRQ9BV79 373 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 COG5Q9UP83 839 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 F8VP50 259 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 IFNA1P01562 189 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 APOC3P02656 99 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 ACOT2P49753 483 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 OAZ1P54368 228 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 ELOAQ14241 798 aaKnown RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 RPL3LQ92901 407 aaKnown RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 C18orf25Q96B23 403 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 POP1Q99575 1024 aaKnown RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 C2orf49Q9BVC5 232 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 FAM120CQ9NX05 1096 aaKnown RBP4.59□□□□□ -1.68
SCN1A-220ENST00000641603 EGFL7Q9UHF1 273 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 PTCH2Q9Y6C5 1203 aa4.59□□□□□ -1.68
SCN1A-220ENST00000641603 FAM170BA6NMN3 283 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 DCLK1O15075 740 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 EEDO75530 441 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 IL1AP01583 271 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MT-ND5P03915 603 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 GJA1P17302 382 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PRPS1L1P21108 318 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 HLA-FP30511 346 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 GUCA1AP43080 201 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CDH11P55287 796 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 GALK2Q01415 458 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CHRNEQ04844 493 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 EXOC3L2Q2M3D2 409 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CPTPQ5TA50 214 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 WDR55Q9H6Y2 383 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PRSS51A0A1B0GVH4 220 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CAPN14A8MX76 684 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF432O94892 652 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 OR5F1O95221 314 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms