RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MSANTD2Q6P1R3 559 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GALNT12Q8IXK2 581 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RBM12BQ8IXT5 1001 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MARCH10Q8NA82 808 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ACBD4Q8NC06 268 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 OR5L2Q8NGL0 311 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RDH11Q8TC12 318 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PPP1R13LQ8WUF5 828 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PTCD3Q96EY7 689 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TEFMQ96QE5 360 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 WDR83Q9BRX9 315 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TM6SF1Q9BZW5 370 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C11orf49Q9H6J7 331 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KCNK4Q9NYG8 393 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TUBE1Q9UJT0 475 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FARSAQ9Y285 508 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 POLR3HQ9Y535 204 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FAM155AB1AL88 458 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FOXE1O00358 373 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PGRMC2O15173 223 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SNAP91O60641 907 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 EOMESO95936 686 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ERBB2P04626 1255 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PGRP06401 933 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLC2A2P11168 524 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CNR2P34972 360 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MATKP42679 507 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RFX3P48380 749 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PCBD1P61457 104 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ARHGAP8P85298 464 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FAM153CQ494X1 144 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 BRMS1LQ5PSV4 323 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C6orf52Q5T4I8 152 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 EFCAB12Q6NXP0 572 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 BTNL3Q6UXE8 466 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TRAPPC11Q7Z392 1133 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C4orf33Q8N1A6 199 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 UBE2J2Q8N2K1 259 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM178AQ8NBL3 297 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DPF2Q92785 391 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 EEF2KMTQ96G04 330 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PLEKHF1Q96S99 279 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 APOL5Q9BWW9 433 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SEMA6AQ9H2E6 1030 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CALML5Q9NZT1 146 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KLHL13Q9P2N7 655 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SEC14L4Q9UDX3 406 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FTSJ1Q9UET6 329 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF639Q9UID6 485 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 LOC102723996A0A087X1L8 192 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FAM240BA0A1B0GVZ2 78 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 D6RAR5 112 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MPPED1O15442 326 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PDPK1O15530 556 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 USP2O75604 605 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PSMG1O95456 288 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 OLFM2O95897 454 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CBX7O95931 251 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 POU2F2P09086 479 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IFNGR1P15260 489 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 HOXA9P31269 272 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CEBPAP49715 358 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CCNG1P51959 295 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 OR2B6P58173 313 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MYL6P60660 151 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PITPNAQ00169 270 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IKZF1Q13422 519 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DYRK1AQ13627 763 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GPR33Q49SQ1 333 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 INO80DQ53TQ3 878 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM201Q5SNT2 666 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NUP54Q7Z3B4 507 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MILR1Q7Z6M3 343 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SPATA6LQ8N4H0 392 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CARNMT1Q8N4J0 409 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FAM47BQ8NA70 645 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 OR9A4Q8NGU2 314 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C1orf54Q8WWF1 131 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TCEAL7Q9BRU2 100 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 YIPF4Q9BSR8 244 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SHCBP1LQ9BZQ2 653 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DDX47Q9H0S4 455 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IFT46Q9NQC8 304 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PAK1IP1Q9NWT1 392 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SAGE1Q9NXZ1 904 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TAS2R14Q9NYV8 317 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GPR34Q9UPC5 381 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DUOX2Q9NRD8 1548 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PRAMEF33A0A0G2JMD5 474 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 E2F8A0AVK6 867 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ISM1B1AKI9 464 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RNASET2O00584 256 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PIP5K1BO14986 540 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PRKAB2O43741 272 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PRAMEF10O60809 474 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KCNJ13O60928 360 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CRTAPO75718 401 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZBTB11O95625 1053 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ANXA1P04083 346 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NR3C1P04150 777 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms