RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DAZLQ92904 295 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 ZKSCAN4Q969J2 545 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 LRRC59Q96AG4 307 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 GIMAP5Q96F15 307 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OXNAD1Q96HP4 312 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 PGAM5Q96HS1 289 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 B3GALT6Q96L58 329 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SGK494Q96LW2 274 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HARBI1Q96MB7 349 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NSMCE3Q96MG7 304 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SEC62Q99442 399 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 DDOQ99489 341 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OLFM1Q99784 485 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SEMA3CQ99985 751 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 BTBD10Q9BSF8 475 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 C16orf70Q9BSU1 422 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 KIFC3Q9BVG8 833 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 C1QTNF1Q9BXJ1 281 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TMEM39BQ9GZU3 492 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SHARPINQ9H0F6 387 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 THAP2Q9H0W7 228 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SEMA6AQ9H2E6 1030 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 DPAGT1Q9H3H5 408 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 UNC45AQ9H3U1 944 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 RAD21L1Q9H4I0 556 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ATP13A3Q9H7F0 1226 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 KAT14Q9H8E8 782 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 Q9H8V8 135 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 PANK3Q9H999 370 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ACKR4Q9NPB9 350 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 A4GALTQ9NPC4 353 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SLC38A7Q9NVC3 462 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OSER1Q9NX31 292 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MIOSQ9NXC5 875 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NPAP1Q9NZP6 1156 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 B4GALT7Q9UBV7 327 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ZNF69Q9UC07 566 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 AASSQ9UDR5 926 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 LRWD1Q9UFC0 647 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SEC63Q9UGP8 760 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 TUBE1Q9UJT0 475 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OSGIN1Q9UJX0 560 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NENFQ9UMX5 172 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 EXO1Q9UQ84 846 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 TNNQ9UQP3 1299 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 R3HDM2Q9Y2K5 976 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 CMAHPQ9Y471 501 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 JRKLQ9Y4A0 524 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 YIPF1Q9Y548 306 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SPIN1Q9Y657 262 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 PCDH11YQ9BZA8 1340 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 LOC102723996A0A087X1L8 192 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PPK0 400 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PPM1 405 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PPQ1 181 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PR80 420 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PRB8 838 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CCDC189A1A4V9 331 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 OR2A25A4D2G3 310 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PI4KAP2A4QPH2 592 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PLEKHD1A6NEE1 506 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 C15orf61A6NNL5 157 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 C15orf62A8K5M9 175 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 KPNA7A9QM74 516 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PALM2-AKAP2B1ALY0 433 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 EIF3CLB5ME19 914 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 C2CD4DB7Z1M9 353 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 G3V2L1 256 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 H3BQ06 376 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 PLOD2O00469 737 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SOCS3O14543 225 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 GAPDHSO14556 408 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 ADAMDEC1O15204 470 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 NDUFS4O43181 175 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CREB3O43889 395 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 HS6ST1O60243 411 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RNASEH1O60930 286 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 MITFO75030 526 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 ENTPD3O75355 529 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MED24O75448 989 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RNASEH2AO75792 299 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 CDC123O75794 336 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 RSL1D1O76021 490 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 BAIAP3O94812 1187 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 BMP10O95393 424 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 DUS4LO95620 317 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 BAG3O95817 575 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 GH2P01242 217 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RAF1P04049 648 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 H1F0P07305 194 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 KRT19P08727 400 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 DANCRP0C864 163 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 HAPLN1P10915 354 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 ACADMP11310 421 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ACTN1P12814 892 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RARGP13631 454 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 GNAZP19086 355 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 TRIM21P19474 475 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 BCL3P20749 454 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CAPN3P20807 821 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms