RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 GPR135Q8IZ08 494 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 DNAJC22Q8N4W6 341 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 CISD2Q8N5K1 135 aaKnown RBP15.86■□□□□ 0.13
CLN3-255ENST00000637100 KRT35Q92764 455 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 PTERQ96BW5 349 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 SPATA13Q96N96 652 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 APOL2Q9BQE5 337 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 AP1M1Q9BXS5 423 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 SPRTNQ9H040 489 aaPredicted RBP15.86■□□□□ 0.13
CLN3-255ENST00000637100 FAM96AQ9H5X1 160 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 VPS37BQ9H9H4 285 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 SLC22A11Q9NSA0 550 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 NLE1Q9NVX2 485 aaPredicted RBP15.86■□□□□ 0.13
CLN3-255ENST00000637100 P4HTMQ9NXG6 502 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 OR6C2Q9NZP2 312 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 NTNG1Q9Y2I2 539 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 PCDHGA10Q9Y5H3 936 aa15.86■□□□□ 0.13
CLN3-255ENST00000637100 PCM1Q15154 2024 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 A1L4Q6 167 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 LIN7AO14910 233 aaPredicted RBP15.85■□□□□ 0.13
CLN3-255ENST00000637100 OR2B3O76000 313 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 ALPPP05187 535 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 UMODP07911 640 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 UGT2B7P16662 529 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 MC4RP32245 332 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 SHMT2P34897 504 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 OTUD4Q01804 1114 aaKnown RBP15.85■□□□□ 0.13
CLN3-255ENST00000637100 SLC5A12Q1EHB4 618 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 ZNF787Q6DD87 383 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 TLDC1Q6P9B6 456 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 PIANPQ8IYJ0 282 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 CLDN19Q8N6F1 224 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 CLEC1AQ8NC01 280 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 TBL1YQ9BQ87 522 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 HEMGNQ9BXL5 484 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 KLHL25Q9H0H3 589 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 XKR8Q9H6D3 395 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 SPHK1Q9NYA1 384 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 POLG2Q9UHN1 485 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 SRPK3Q9UPE1 567 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 PCDHA3Q9Y5H8 950 aa15.85■□□□□ 0.13
CLN3-255ENST00000637100 ANKRD12Q6UB98 2062 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 SLC5A10A0PJK1 596 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 ANKUB1A6NFN9 424 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 ENO4A6NNW6 628 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 H7C0C1 242 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 PJA2O43164 708 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 ZNF189O75820 626 aaPredicted RBP15.84■□□□□ 0.13
CLN3-255ENST00000637100 CTSBP07858 339 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 CHRM5P08912 532 aaPredicted RBP15.84■□□□□ 0.13
CLN3-255ENST00000637100 RBP3P10745 1247 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 COL8A1P27658 744 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 OTX2P32243 289 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 CTNNA1P35221 906 aaKnown RBP15.84■□□□□ 0.13
CLN3-255ENST00000637100 ATP5OP48047 213 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 PRKG2Q13237 762 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 PRPSAP1Q14558 356 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 NKAIN1Q4KMZ8 207 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 ZNF449Q6P9G9 518 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 PACS1Q6VY07 963 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 CUZD1Q86UP6 607 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 CNGA4Q8IV77 575 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 CDKL3Q8IVW4 592 aaPredicted RBP15.84■□□□□ 0.13
CLN3-255ENST00000637100 OR5AR1Q8NGP9 310 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 CDKN2AIPNLQ96HQ2 116 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 DNAJC1Q96KC8 554 aaKnown RBP15.84■□□□□ 0.13
CLN3-255ENST00000637100 FERMT1Q9BQL6 677 aa15.84■□□□□ 0.13
CLN3-255ENST00000637100 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-255ENST00000637100 PTRH2Q9Y3E5 179 aaKnown RBP15.84■□□□□ 0.13
CLN3-255ENST00000637100 COPG1Q9Y678 874 aaKnown RBP15.84■□□□□ 0.13
CLN3-255ENST00000637100 A0A0J9YY10 115 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 BHMG1C9JSJ3 638 aaPredicted RBP15.83■□□□□ 0.12
CLN3-255ENST00000637100 AGPSO00116 658 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 QSOX1O00391 747 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 PEX12O00623 359 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 ZSCAN9O15535 394 aaPredicted RBP15.83■□□□□ 0.12
CLN3-255ENST00000637100 AP2A1O95782 977 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 TPM1P09493 284 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 ITGAXP20702 1163 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 FOLR3P41439 243 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 NSG1P42857 185 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 MAGEA1P43355 309 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 TMPRSS15P98073 1019 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 PLOD1Q02809 727 aaPredicted RBP15.83■□□□□ 0.12
CLN3-255ENST00000637100 RAPSNQ13702 412 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 ITIH4Q14624 930 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 DBN1Q16643 649 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 MLIPQ5VWP3 458 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 LYPLAL1Q5VWZ2 237 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 CCDC50Q8IVM0 306 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 TMEM151BQ8IW70 566 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 TTC13Q8NBP0 860 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 ST6GALNAC3Q8NDV1 305 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 OR5K2Q8NHB8 316 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 UBE2Q2Q8WVN8 375 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 TM9SF4Q92544 642 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 FKBP10Q96AY3 582 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 C5orf34Q96MH7 638 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 HGH1Q9BTY7 390 aa15.83■□□□□ 0.12
CLN3-255ENST00000637100 MENTQ9BUN1 341 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms