RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RPS6KC1Q96S38 1066 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 NUP85Q9BW27 656 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 S1PR5Q9H228 398 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 PDCL3Q9H2J4 239 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 PPCSQ9HAB8 311 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 MAN2C1Q9NTJ4 1040 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 CACNG4Q9UBN1 327 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 ZNF107Q9UII5 783 aaPredicted RBP2.27□□□□□ -2.05
SCN1A-208ENST00000625916 ZNF510Q9Y2H8 683 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 KCNE2Q9Y6J6 123 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 CSNK1G3Q9Y6M4 447 aa2.27□□□□□ -2.05
SCN1A-208ENST00000625916 COL4A4P53420 1690 aaPredicted RBP2.27□□□□□ -2.05
SCN1A-208ENST00000625916 PI4K2BG5E9Z4 385 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 AVILO75366 819 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 HOXD4P09016 255 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 IGHV4-31P0DP07 118 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 OXTRP30559 389 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 BSGP35613 385 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 TSFMP43897 325 aaKnown RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 CCT5P48643 541 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 RPS3AP61247 264 aaKnown RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 EIF4A2Q14240 407 aaKnown RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 CAPRIN1Q14444 709 aaKnown RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 PCGF3Q3KNV8 242 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 EIPR1Q53HC9 387 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 RARS2Q5T160 578 aaKnown RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 GRTP1Q5TC63 336 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 TMEM207Q6UWW9 146 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 VITQ6UXI7 678 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 ZNF841Q6ZN19 808 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 INTS8Q75QN2 995 aaKnown RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 CEACAM19Q7Z692 300 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 FAM114A1Q8IWE2 563 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 ZBED8Q8IZ13 594 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 METTL4Q8N3J2 472 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 ETNPPLQ8TBG4 499 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 ZUFSPQ96AP4 578 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 ELMOD3Q96FG2 381 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 PERPQ96FX8 193 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 C1orf74Q96LT6 269 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 SCLT1Q96NL6 688 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 DACH2Q96NX9 599 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 NCAPGQ9BPX3 1015 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 ZNF577Q9BSK1 485 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 ARRDC1-AS1Q9H2J1 176 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 HEXA-AS1Q9H8Q6 139 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 FGF21Q9NSA1 209 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 SETD4Q9NVD3 440 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 B4GALT7Q9UBV7 327 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 POMT2Q9UKY4 750 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 PPP2R2CQ9Y2T4 447 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 PCDHGA5Q9Y5G8 931 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 LYVE1Q9Y5Y7 322 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 DGKBQ9Y6T7 804 aa2.26□□□□□ -2.05
SCN1A-208ENST00000625916 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.26□□□□□ -2.05
SCN1A-208ENST00000625916 A0A1W2PPH5 198 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 A0A1W2PR80 420 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 SCAMP1O15126 338 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 CCNDBP1O95273 360 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 SEC24AO95486 1093 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 IGHEP01854 428 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 BCL3P20749 454 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 DRD3P35462 400 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 RPL21P46778 160 aaKnown RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 TUBP50607 506 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 POU5F1Q01860 360 aaKnown RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 GUCY2DQ02846 1103 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 CD300CQ08708 224 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 FCHO2Q0JRZ9 810 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 PNRC1Q12796 327 aaPredicted RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 EIF4EBP2Q13542 120 aaPredicted RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 RFTN1Q14699 578 aaPredicted RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 SLC25A53Q5H9E4 307 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 FHL5Q5TD97 284 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 SLC25A47Q6Q0C1 308 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 R3HCC1LQ7Z5L2 792 aaKnown RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 ADCK1Q86TW2 530 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 ARID3BQ8IVW6 561 aaPredicted RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 CFAP206Q8IYR0 622 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 CDK20Q8IZL9 346 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 EID3Q8N140 333 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 SUMF1Q8NBK3 374 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 TYMSOSQ8TAI1 123 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 PHLDA1Q8WV24 401 aaPredicted RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 URM1Q9BTM9 101 aaKnown RBP2.25□□□□□ -2.05
SCN1A-208ENST00000625916 CPVLQ9H3G5 476 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 P4HTMQ9NXG6 502 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 CTSZQ9UBR2 303 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 SLC13A4Q9UKG4 626 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 MTMR6Q9Y217 621 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 HCFC1P51610 2035 aa2.25□□□□□ -2.05
SCN1A-208ENST00000625916 HYKKA2RU49 373 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 TO15178 435 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 EPHB6O15197 1021 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 HPP00738 406 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 KLK2P20151 261 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 HLA-FP30511 346 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 SLC6A6P31641 620 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 DLG2Q15700 870 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 CES4AQ5XG92 561 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms