RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, human

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-211	ENST00000600868	PDE10A	Q9Y233	779 aa		13.98	□□□□□ -0.17
UPF1-211	ENST00000600868	OARD1	Q9Y530	152 aa		13.98	□□□□□ -0.17
UPF1-211	ENST00000600868	FRYL	O94915	3013 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	TRBV23OR9-2	A0A075B6M9	112 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	SYCE1L	A8MT33	242 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	TRIM38	O00635	465 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	PLIN3	O60664	434 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	VIP	P01282	170 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	KCNC1	P48547	511 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	RPIA	P49247	311 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	AP1S2	P56377	157 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	CDKL1	Q00532	357 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	KRT33B	Q14525	404 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	PHKG1	Q16816	387 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	INAVA	Q3KP66	663 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	C14orf28	Q4W4Y0	310 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	CDKL4	Q5MAI5	379 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	DUS1L	Q6P1R4	473 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	C16orf46	Q6P387	395 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	GPSM1	Q86YR5	675 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	SFTPA2	Q8IWL1	248 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	TRIM48	Q8IWZ4	208 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	RBM12B	Q8IXT5	1001 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	TMEM151A	Q8N4L1	468 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	ARL10	Q8N8L6	244 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	TCP10L	Q8TDR4	215 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	RAD51AP1	Q96B01	352 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	IQCG	Q9H095	443 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	KIR3DX1	Q9H7L2	352 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	SLC40A1	Q9NP59	571 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	RXFP3	Q9NSD7	469 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	SIRPG	Q9P1W8	387 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	XPR1	Q9UBH6	696 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	EMCN	Q9ULC0	261 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	RNF112	Q9ULX5	631 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	MYO15A	Q9UKN7	3530 aa		13.97	□□□□□ -0.17
UPF1-211	ENST00000600868	TARM1	B6A8C7	271 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	MYO1C	O00159	1063 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	TM9SF1	O15321	606 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	KDM1A	O60341	852 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	ZWINT	O95229	277 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	PROC	P04070	461 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	HIST1H2AD	P20671	130 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	RPA3	P35244	121 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	GRK6	P43250	576 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	BDKRB1	P46663	353 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	HHEX	Q03014	270 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	TGFBI	Q15582	683 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	AASDH	Q4L235	1098 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	FRA10AC1	Q70Z53	315 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	SLC35F3	Q8IY50	421 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	EID2	Q8N6I1	236 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	KY	Q8NBH2	561 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	OR9A1P	Q8NGU1	263 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	HIST1H2AH	Q96KK5	128 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	CCDC138	Q96M89	665 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	CAMK1G	Q96NX5	476 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	PHOX2B	Q99453	314 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	HIST1H2AJ	Q99878	128 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	H2AFJ	Q9BTM1	129 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	STN1	Q9H668	368 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	UCK1	Q9HA47	277 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	KCNK9	Q9NPC2	374 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	NCKIPSD	Q9NZQ3	722 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	TMCO1	Q9UM00	188 aa		13.96	□□□□□ -0.17
UPF1-211	ENST00000600868	ARID1B	Q8NFD5	2236 aa	Predicted RBP	13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	PRAMEF33	A0A0G2JMD5	474 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	PABPN1L	A6NDY0	278 aa	Known RBP	13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	TK2	O00142	265 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	FLRT2	O43155	660 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	SIGLEC6	O43699	453 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	SBK3	P0C264	359 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	MTHFD2	P13995	350 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	MAZ	P56270	477 aa	Known RBP	13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	PRKG2	Q13237	762 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	MPP2	Q14168	576 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	GRB7	Q14451	532 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	CCSMST1	Q4G0I0	132 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	TMEM26	Q6ZUK4	368 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	ASCL5	Q7RTU5	278 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	PDPR	Q8NCN5	879 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	OR6C4	Q8NGE1	309 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	RDH11	Q8TC12	318 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	SH3KBP1	Q96B97	665 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	APOLD1	Q96LR9	279 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	PKP4	Q99569	1192 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	HGH1	Q9BTY7	390 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	ARL15	Q9NXU5	204 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	NUDT4	Q9NZJ9	180 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	CPSF2	Q9P2I0	782 aa	Known RBP	13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	SLC17A7	Q9P2U7	560 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	MID2	Q9UJV3	735 aa		13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	TDRKH	Q9Y2W6	561 aa	Known RBP	13.95	□□□□□ -0.18
UPF1-211	ENST00000600868	TMEM120B	A0PK00	339 aa		13.94	□□□□□ -0.18
UPF1-211	ENST00000600868	SUPT3H	B4E1H0	165 aa		13.94	□□□□□ -0.18
UPF1-211	ENST00000600868	UBXN8	O00124	270 aa		13.94	□□□□□ -0.18
UPF1-211	ENST00000600868	PPM1D	O15297	605 aa		13.94	□□□□□ -0.18

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