RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 LMAN1P49257 510 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 ZNF140P52738 457 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-212ENST00000597995 RPA4Q13156 261 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 PRPSAP1Q14558 356 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 PARP6Q2NL67 630 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 GPR33Q49SQ1 333 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 ZNF658BQ4V348 819 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-212ENST00000597995 ZNF449Q6P9G9 518 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 CDHR3Q6ZTQ4 885 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 SNX20Q7Z614 316 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 AMIGO1Q86WK6 493 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 GPR135Q8IZ08 494 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 NXPE1Q8N323 547 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 TTC13Q8NBP0 860 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 OR52E1Q8NGJ3 308 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 TBL1YQ9BQ87 522 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 FERMT1Q9BQL6 677 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 CHRNA10Q9GZZ6 450 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 OR52A5Q9H2C5 316 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 COG4Q9H9E3 785 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 ERRFI1Q9UJM3 462 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-212ENST00000597995 GUCA1BQ9UMX6 200 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 B3GNT3Q9Y2A9 372 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 AP1M2Q9Y6Q5 423 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 IGLV3-16A0A075B6K0 115 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 GOLGA6L9A6NEM1 432 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 CCL22O00626 93 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 KRT86O43790 486 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 IPO13O94829 963 aaKnown RBP12.1□□□□□ -0.47
TRIM28-212ENST00000597995 ALPPP05187 535 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 GSTM1P09488 218 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 TPH1P17752 444 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 ITGALP20701 1170 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 SOX8P57073 446 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 TMPRSS15P98073 1019 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 GSTM4Q03013 218 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 MYBPC3Q14896 1274 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 NR6A1Q15406 480 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 OASLQ15646 514 aaKnown RBP12.1□□□□□ -0.47
TRIM28-212ENST00000597995 ZRANB3Q5FWF4 1079 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 DCAF10Q5QP82 559 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 RHBDD2Q6NTF9 364 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 MRGPREQ86SM8 312 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 ADGRF3Q8IZF5 1079 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 TXLNBQ8N3L3 684 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 TAB3Q8N5C8 712 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-212ENST00000597995 CLEC1AQ8NC01 280 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 PROKR1Q8TCW9 393 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.1□□□□□ -0.47
TRIM28-212ENST00000597995 C19orf60Q96EN9 201 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 TCTN2Q96GX1 697 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 FAM96AQ9H5X1 160 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 VPS37BQ9H9H4 285 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 ASF1BQ9NVP2 202 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 ACTR10Q9NZ32 417 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 FEZ2Q9UHY8 353 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-212ENST00000597995 SLC5A6Q9Y289 635 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 CENPEQ02224 2701 aa12.1□□□□□ -0.47
TRIM28-212ENST00000597995 PCSK5Q92824 1860 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 H3BMH7 237 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PEX12O00623 359 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 CLDN1O95832 211 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PRSS56P0CW18 603 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PVRP15151 417 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PDHA2P29803 388 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 OTX2P32243 289 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 DCTP40126 519 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 CDKN1CP49918 316 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 RAPSNQ13702 412 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 BOP1Q14137 746 aaKnown RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 SIX1Q15475 284 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 KYNUQ16719 465 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 CRB2Q5IJ48 1285 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 MEI1Q5TIA1 1274 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 MLIPQ5VWP3 458 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 LYPLAL1Q5VWZ2 237 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 SPESP1Q6UW49 350 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 ARHGEF18Q6ZSZ5 1173 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PRUNE1Q86TP1 453 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 HOOK3Q86VS8 718 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 GALNT16Q8N428 558 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 CISD2Q8N5K1 135 aaKnown RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 C19orf47Q8N9M1 422 aaKnown RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PHC3Q8NDX5 983 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 TM9SF4Q92544 642 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 TFGQ92734 400 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 N4BP2L2Q92802 583 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PTERQ96BW5 349 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 DNAJC1Q96KC8 554 aaKnown RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 C5orf34Q96MH7 638 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PPP1R2P1Q96PQ5 205 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 BARD1Q99728 777 aaKnown RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 ZNF552Q9H707 407 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 PIH1D1Q9NWS0 290 aaKnown RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 ZDHHC3Q9NYG2 299 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 GPN3Q9UHW5 284 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-212ENST00000597995 POLEQ07864 2286 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 ANKRD12Q6UB98 2062 aa12.09□□□□□ -0.47
TRIM28-212ENST00000597995 CELSR2Q9HCU4 2923 aa12.08□□□□□ -0.48
TRIM28-212ENST00000597995 FER1L5A0AVI2 2057 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms