RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 N4BP2L2Q92802 583 aaPredicted RBP23.12■■□□□ 1.29
LSM4-202ENST00000593564 OR2A14Q96R47 310 aa23.12■■□□□ 1.29
LSM4-202ENST00000593564 SMAD5Q99717 465 aaKnown RBP23.12■■□□□ 1.29
LSM4-202ENST00000593564 LACRTQ9GZZ8 138 aa23.12■■□□□ 1.29
LSM4-202ENST00000593564 FAM60AQ9NP50 221 aa23.12■■□□□ 1.29
LSM4-202ENST00000593564 ASF1AQ9Y294 204 aa23.12■■□□□ 1.29
LSM4-202ENST00000593564 PRSS21Q9Y6M0 314 aa23.12■■□□□ 1.29
LSM4-202ENST00000593564 AP1M2Q9Y6Q5 423 aa23.12■■□□□ 1.29
LSM4-202ENST00000593564 TEX15Q9BXT5 2789 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 MROH6A6NGR9 719 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 AP2A1O95782 977 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 FTH1P02794 183 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 UGT2B7P16662 529 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 GABRA4P48169 554 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 ZIC1Q15915 447 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 SLC6A19Q695T7 634 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 TBC1D21Q8IYX1 336 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 RBMXL3Q8N7X1 1067 aaKnown RBP23.11■■□□□ 1.29
LSM4-202ENST00000593564 PNPLA2Q96AD5 504 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 SGSM3Q96HU1 749 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 IP6K3Q96PC2 410 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 ALS2CR12Q96Q35 445 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 SLAMF7Q9NQ25 335 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 OR6C2Q9NZP2 312 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 POLG2Q9UHN1 485 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 PIKFYVEQ9Y2I7 2098 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 ESPL1Q14674 2120 aa23.11■■□□□ 1.29
LSM4-202ENST00000593564 NOTCH2Q04721 2471 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 OR2B3O76000 313 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 PTMAP06454 111 aaKnown RBP23.1■■□□□ 1.29
LSM4-202ENST00000593564 CHRM5P08912 532 aaPredicted RBP23.1■■□□□ 1.29
LSM4-202ENST00000593564 MSNP26038 577 aaKnown RBP23.1■■□□□ 1.29
LSM4-202ENST00000593564 VARSP26640 1264 aaKnown RBP23.1■■□□□ 1.29
LSM4-202ENST00000593564 PLOD1Q02809 727 aaPredicted RBP23.1■■□□□ 1.29
LSM4-202ENST00000593564 RHBDD2Q6NTF9 364 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 MRGPREQ86SM8 312 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 FLVCR1-AS1Q8TAF5 88 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 PROKR1Q8TCW9 393 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 ELMO1Q92556 727 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 MFRPQ9BY79 579 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 PIH1D1Q9NWS0 290 aaKnown RBP23.1■■□□□ 1.29
LSM4-202ENST00000593564 SPHK1Q9NYA1 384 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 UNC79Q9P2D8 2635 aa23.1■■□□□ 1.29
LSM4-202ENST00000593564 PCSK5Q92824 1860 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 PSMD3O43242 534 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 CBSLP0DN79 551 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 OTX2P32243 289 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 CBSP35520 551 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 GDF10P55107 478 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 KLF1Q13351 362 aaPredicted RBP23.09■■□□□ 1.29
LSM4-202ENST00000593564 SSPNQ14714 243 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 DEFB110Q30KQ9 67 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 C4orf17Q53FE4 359 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 PRR30Q53SZ7 412 aaPredicted RBP23.09■■□□□ 1.29
LSM4-202ENST00000593564 VWA5B1Q5TIE3 1220 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 OR5K2Q8NHB8 316 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 SSC4DQ8WTU2 575 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 GBP5Q96PP8 586 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 LUZP4Q9P127 313 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 C5AR2Q9P296 337 aa23.09■■□□□ 1.29
LSM4-202ENST00000593564 A0A0J9YY10 115 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 SLC5A10A0PJK1 596 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 BHMG1C9JSJ3 638 aaPredicted RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 ZSCAN9O15535 394 aaPredicted RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 HCRTR1O43613 425 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 CD63P08962 238 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 TPBGLP0DKB5 382 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 FOXN2P32314 431 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 BRD3Q15059 726 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 MLIPQ5VWP3 458 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 RAD9BQ6WBX8 426 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 LINC00523Q86TU6 105 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 UBL4BQ8N7F7 174 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 SLC35B2Q8TB61 432 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 SPRTNQ9H040 489 aaPredicted RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 CUEDC1Q9NWM3 386 aaPredicted RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 PLEKHB1Q9UF11 243 aaPredicted RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 GPN3Q9UHW5 284 aaPredicted RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 AMFRQ9UKV5 643 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 SRPK3Q9UPE1 567 aa23.08■■□□□ 1.29
LSM4-202ENST00000593564 R3HDM2Q9Y2K5 976 aaKnown RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 TDRKHQ9Y2W6 561 aaKnown RBP23.08■■□□□ 1.29
LSM4-202ENST00000593564 OR51F1A6NGY5 319 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 TCP11X1B4DZS4 312 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 DCDP81605 110 aaKnown RBP23.07■■□□□ 1.28
LSM4-202ENST00000593564 RAPSNQ13702 412 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 SYTL3Q4VX76 610 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 C1orf189Q5VU69 101 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 TLDC1Q6P9B6 456 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 PEX26Q7Z412 305 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 ACRBPQ8NEB7 543 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 FER1L6-AS2Q96M78 137 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 TMEM121Q9BTD3 319 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 AP1M1Q9BXS5 423 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 SLC29A3Q9BZD2 475 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 PTRH2Q9Y3E5 179 aaKnown RBP23.07■■□□□ 1.28
LSM4-202ENST00000593564 FER1L5A0AVI2 2057 aa23.07■■□□□ 1.28
LSM4-202ENST00000593564 CCDC78A2IDD5 438 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 CCDC162PA2VCL2 907 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 MIF4GDA9UHW6 222 aaKnown RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms