RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ICA1LQ8NDH6 482 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 OR9A1PQ8NGU1 263 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 KHSRPQ92945 711 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIG3-216ENST00000593099 TSACCQ96A04 125 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 PLEKHA8Q96JA3 519 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 C1orf50Q9BV19 199 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 MMADHCQ9H3L0 296 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 PAPOLBQ9NRJ5 636 aaKnown RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 TIMM22Q9Y584 194 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 PCDHB11Q9Y5F2 797 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 A0A1W2PPC1 479 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 C5orf67F2Z3F1 127 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 KERAO60938 352 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 ZNF682O95780 498 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 NUDT14O95848 222 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 UROSP10746 265 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 IDO1P14902 403 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 TIMP2P16035 220 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 AGXTP21549 392 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 DCP2Q8IU60 420 aaKnown RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 PYCR2Q96C36 320 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 TSSK3Q96PN8 268 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 GATA5Q9BWX5 397 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 C3orf14Q9HBI5 128 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 TMEM30AQ9NV96 361 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 TMCC3Q9ULS5 477 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 DHRS7Q9Y394 339 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 OR1A2Q9Y585 309 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 PLXNB2O15031 1838 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 NDUFB5O43674 189 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 OR4F21O95013 312 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 CD68P34810 354 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 SLC14A2Q15849 920 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 ARL13AQ5H913 290 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 Q7L0L9 218 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 CDH24Q86UP0 819 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 CAMKVQ8NCB2 501 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 SP7Q8TDD2 431 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 EEF1AKMT1Q8WVE0 214 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 OTULINQ96BN8 352 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 MVB12BQ9H7P6 319 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 ANKHQ9HCJ1 492 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 PRSS16Q9NQE7 514 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 TAC3Q9UHF0 121 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 NPIPB15A6NHN6 443 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 A8MU76 341 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 EGFP01133 1207 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 PCSK2P16519 638 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 S100A1P23297 94 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 PRKCHP24723 683 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 MPSTP25325 297 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 MAPK12P53778 367 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 ZC3H12BQ5HYM0 836 aaKnown RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 AGTRAPQ6RW13 159 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 LRRC70Q7Z2Q7 622 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 RASGRP3Q8IV61 690 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 KDM1BQ8NB78 822 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 VPS33AQ96AX1 596 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 ZDHHC12Q96GR4 267 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 KCTD14Q9BQ13 255 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 HERPUD2Q9BSE4 406 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 HRASLS2Q9NWW9 162 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 LEF1Q9UJU2 399 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 NENFQ9UMX5 172 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 DICER1Q9UPY3 1922 aaKnown RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 A0A0J9YVX5 310 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 LRATO95237 230 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 KCNH1O95259 989 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 EPHA3P29320 983 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 SLBPQ14493 270 aaKnown RBP eCLIP9.62□□□□□ -0.87
LIG3-216ENST00000593099 KDELC1Q6UW63 502 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 LIPIQ6XZB0 460 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 PIM3Q86V86 326 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 CATSPER1Q8NEC5 780 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 NELL1Q92832 810 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 APOOQ9BUR5 198 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 DERL2Q9GZP9 239 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 SLC32A1Q9H598 525 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 KRCC1Q9NPI7 259 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 PNPOQ9NVS9 261 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 IL37Q9NZH6 218 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 IL17CQ9P0M4 197 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 HAO1Q9UJM8 370 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 RIMKLBQ9ULI2 386 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 ZNF232Q9UNY5 417 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 IGLV3-10A0A075B6K4 115 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 FAM92AA1XBS5 289 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 B3GALT2O43825 422 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 TCEA3O75764 348 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 ANXA4P09525 319 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 JMJD7P0C870 316 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 CCR2P41597 374 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 RPL34P49207 117 aaKnown RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 GPX6P59796 221 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 ZNF648Q5T619 568 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 INTS11Q5TA45 600 aaKnown RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 CPTPQ5TA50 214 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 NEK5Q6P3R8 708 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 Q6ZSR6 202 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 PATL1Q86TB9 770 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms