RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PATE1Q8WXA2 126 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 CCDC126Q96EE4 140 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 LRRC61Q9BV99 259 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 IMP3Q9NV31 184 aaKnown RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 PNPOQ9NVS9 261 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 TDRKHQ9Y2W6 561 aaKnown RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 CCDC189A1A4V9 331 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 VILLO15195 856 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 CATP04040 527 aaKnown RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 ENO2P09104 434 aaPredicted RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 HIST1H2AGP0C0S8 130 aaPredicted RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 HIST1H2ADP20671 130 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 MAP4P27816 1152 aaKnown RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 UAP1L1Q3KQV9 507 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 PRRT3Q5FWE3 981 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 DCP2Q8IU60 420 aaKnown RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 RAB3IL1Q8TBN0 382 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 HIST1H2AHQ96KK5 128 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 CCT8L2Q96SF2 557 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 HIST1H2AJQ99878 128 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 H2AFJQ9BTM1 129 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 DRC3Q9H069 523 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 THAP1Q9NVV9 213 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 ZSCAN32Q9NX65 697 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 WWOXQ9NZC7 414 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 MARCOQ9UEW3 520 aaPredicted RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 APOBEC3BQ9UH17 382 aaKnown RBP24.44■■□□□ 1.5
SHMT1-207ENST00000580002 PCTPQ9UKL6 214 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 STX16-NPEPL1H3BU86 382 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 TNFRSF10AO00220 468 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 IFRD1O00458 451 aaPredicted RBP24.43■■□□□ 1.5
SHMT1-207ENST00000580002 STX16O14662 325 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 KCNJ13O60928 360 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 SLC16A8O95907 504 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 CSF2P04141 144 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 RPS17P08708 135 aaKnown RBP24.43■■□□□ 1.5
SHMT1-207ENST00000580002 ANXA5P08758 320 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 KITP10721 976 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 GRK2P25098 689 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 MPSTP25325 297 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 AFF3P51826 1226 aaKnown RBP24.43■■□□□ 1.5
SHMT1-207ENST00000580002 RCN2Q14257 317 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 RPE65Q16518 533 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 CFAP157Q5JU67 520 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 SULT1C3Q6IMI6 304 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 C2orf73Q8N5S3 287 aaPredicted RBP24.43■■□□□ 1.5
SHMT1-207ENST00000580002 ZBTB44Q8NCP5 570 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 TRPC4APQ8TEL6 797 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 PIGKQ92643 395 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 FERD3LQ96RJ6 166 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 TRIM54Q9BYV2 358 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 SEMA4BQ9NPR2 832 aaPredicted RBP24.43■■□□□ 1.5
SHMT1-207ENST00000580002 PILRBQ9UKJ0 227 aa24.43■■□□□ 1.5
SHMT1-207ENST00000580002 KLHL33A6NCF5 533 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 A6NCN8 305 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 E2F3O00716 465 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 S100BP04271 92 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 LRP8Q14114 963 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 KIF19Q2TAC6 998 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 TUBB8Q3ZCM7 444 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 FRMD7Q6ZUT3 714 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 RAB44Q7Z6P3 723 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 ZNF781Q8N8C0 355 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 JPH3Q8WXH2 748 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 HGH1Q9BTY7 390 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 COL25A1Q9BXS0 654 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 TAAR2Q9P1P5 351 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 STOX2Q9P2F5 926 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 ZNF624Q9P2J8 865 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 SNX11Q9Y5W9 270 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 ARHGEF17Q96PE2 2063 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 CCNT2O60583 730 aaKnown RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 SDC3O75056 442 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 CTSEP14091 401 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 IMPA1P29218 277 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 PRDX3P30048 256 aaKnown RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 CDKL1Q00532 357 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 ILF3Q12906 894 aaKnown RBP eCLIP24.42■■□□□ 1.56e-6■□□□□ 10.2
SHMT1-207ENST00000580002 FASTKQ14296 549 aaKnown RBP24.42■■□□□ 1.5
SHMT1-207ENST00000580002 ABRAXAS1Q6UWZ7 409 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 UNC5DQ6UXZ4 953 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 TAF8Q7Z7C8 310 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 DCBLD1Q8N8Z6 715 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 CD244Q9BZW8 370 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 ABCF3Q9NUQ8 709 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 ZDHHC2Q9UIJ5 367 aa24.42■■□□□ 1.5
SHMT1-207ENST00000580002 FANCMQ8IYD8 2048 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 HSPA4LO95757 839 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 NME1P15531 152 aaKnown RBP24.41■■□□□ 1.5
SHMT1-207ENST00000580002 C21orf59P57076 290 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 PCBP2Q15366 365 aaKnown RBP eCLIP24.41■■□□□ 1.5
SHMT1-207ENST00000580002 PTCHD3Q3KNS1 767 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 ANKS6Q68DC2 871 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 OR9A1PQ8NGU1 263 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 OR5K2Q8NHB8 316 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 ZNF483Q8TF39 744 aaPredicted RBP24.41■■□□□ 1.5
SHMT1-207ENST00000580002 ZNF480Q8WV37 535 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 SREK1Q8WXA9 508 aaKnown RBP24.41■■□□□ 1.5
SHMT1-207ENST00000580002 FBXL8Q96CD0 374 aa24.41■■□□□ 1.5
SHMT1-207ENST00000580002 ZC3H10Q96K80 434 aaKnown RBP24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms