RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 NUP107P57740 925 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 KRTAP1-1Q07627 177 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 TMEM115Q12893 351 aaPredicted RBP15.47■□□□□ 0.07
VPS53-218ENST00000575207 NFE2L1Q14494 772 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 IHHQ14623 411 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 ZIC1Q15915 447 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 TFDP3Q5H9I0 405 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 CATSPEREQ5SY80 951 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 CNSTQ6PJW8 725 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 GPR26Q8NDV2 337 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 DLG3Q92796 817 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 C12orf66Q96MD2 445 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 HES7Q9BYE0 225 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 SRMSQ9H3Y6 488 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 RMND1Q9NWS8 449 aa15.47■□□□□ 0.07
VPS53-218ENST00000575207 GTPBP10A4D1E9 387 aaKnown RBP15.46■□□□□ 0.07
VPS53-218ENST00000575207 FOXN3O00409 490 aaPredicted RBP15.46■□□□□ 0.07
VPS53-218ENST00000575207 CLDN4O14493 209 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 ITGAMP11215 1152 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 ERCC2P18074 760 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 SLC9A1P19634 815 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 NDUFA8P51970 172 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 RPL26P61254 145 aaKnown RBP15.46■□□□□ 0.07
VPS53-218ENST00000575207 ZNF33BQ06732 778 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 TAF3Q5VWG9 929 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 NAA35Q5VZE5 725 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 ALS2CLQ60I27 953 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 TTLL10Q6ZVT0 673 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 NEK10Q6ZWH5 1172 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 DENND1AQ8TEH3 1009 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.46■□□□□ 0.07
VPS53-218ENST00000575207 SIGLEC12Q96PQ1 595 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 TDRD1Q9BXT4 1180 aaKnown RBP15.46■□□□□ 0.07
VPS53-218ENST00000575207 KLHL1Q9NR64 748 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 ADGRE2Q9UHX3 823 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 TEKT2Q9UIF3 430 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 GNPTGQ9UJJ9 305 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 RPL26L1Q9UNX3 145 aaKnown RBP15.46■□□□□ 0.07
VPS53-218ENST00000575207 CHKBQ9Y259 395 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 DNMT3AQ9Y6K1 912 aaPredicted RBP15.46■□□□□ 0.07
VPS53-218ENST00000575207 COLEC10Q9Y6Z7 277 aa15.46■□□□□ 0.07
VPS53-218ENST00000575207 EEF2KO00418 725 aaKnown RBP15.45■□□□□ 0.06
VPS53-218ENST00000575207 PTGER1P34995 402 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 MMP13P45452 471 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 ARSEP51690 589 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 ARSFP54793 590 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 AP2B1P63010 937 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 NOMO3P69849 1222 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 KLC1Q07866 573 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 RNFT1Q5M7Z0 435 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 PPP1R15BQ5SWA1 713 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 TIGD7Q6NT04 549 aaPredicted RBP15.45■□□□□ 0.06
VPS53-218ENST00000575207 HIPK1Q86Z02 1210 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 FAM71AQ8IYT1 594 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 VWA5B2Q8N398 1253 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 BEND7Q8N7W2 519 aaPredicted RBP15.45■□□□□ 0.06
VPS53-218ENST00000575207 FAM98AQ8NCA5 519 aaKnown RBP15.45■□□□□ 0.06
VPS53-218ENST00000575207 ACVR1CQ8NER5 493 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.45■□□□□ 0.06
VPS53-218ENST00000575207 LCN9Q8WX39 176 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 ZNF592Q92610 1267 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 WWP1Q9H0M0 922 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 DEF6Q9H4E7 631 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 TMPRSS11EQ9UL52 423 aa15.45■□□□□ 0.06
VPS53-218ENST00000575207 IGHV1-45A0A0A0MS14 117 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 A0A1B0GTH9 108 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 USP27XA6NNY8 438 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 C2orf74A8MZ97 194 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 PSMA7O14818 248 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 DAPK3O43293 454 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 ZNF24P17028 368 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 GPD1P21695 349 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 GTF2H3Q13889 308 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 MARC1Q5VT66 337 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 FOXD4L5Q5VV16 416 aaPredicted RBP15.44■□□□□ 0.06
VPS53-218ENST00000575207 HEPHL1Q6MZM0 1159 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 YTHDF3Q7Z739 585 aaKnown RBP15.44■□□□□ 0.06
VPS53-218ENST00000575207 TMEM178AQ8NBL3 297 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 SPDYE1Q8NFV5 336 aaPredicted RBP15.44■□□□□ 0.06
VPS53-218ENST00000575207 FOXD4L4Q8WXT5 416 aaPredicted RBP15.44■□□□□ 0.06
VPS53-218ENST00000575207 VPS35Q96QK1 796 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 PIP5K1AQ99755 562 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 C19orf24Q9BVV8 132 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 RIC8BQ9NVN3 520 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 RCOR1Q9UKL0 485 aa15.44■□□□□ 0.06
VPS53-218ENST00000575207 DSCR3O14972 297 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 MAFKO60675 156 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 KRT3P12035 628 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 MMP8P22894 467 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 TUBA3CQ13748 450 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 EMC4Q5J8M3 183 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 FBXW10Q5XX13 1052 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 TUBA3EQ6PEY2 450 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 SPESP1Q6UW49 350 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 RFX8Q6ZV50 586 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 NLRP9Q7RTR0 991 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 GALNTL5Q7Z4T8 443 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.43■□□□□ 0.06
VPS53-218ENST00000575207 MCATQ8IVS2 390 aaKnown RBP15.43■□□□□ 0.06
VPS53-218ENST00000575207 DNAJC22Q8N4W6 341 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms