RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 MRPS2Q9Y399 296 aaKnown RBP10.68□□□□□ -0.7
VPS53-207ENST00000570510 SEC16AO15027 2179 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 AKR1B15C9JRZ8 316 aaPredicted RBP10.67□□□□□ -0.7
VPS53-207ENST00000570510 MYO1FO00160 1098 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 IFRD1O00458 451 aaPredicted RBP10.67□□□□□ -0.7
VPS53-207ENST00000570510 BTN3A1O00481 513 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 SOCS6O14544 535 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 MFSD11O43934 449 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 MFAP3LO75121 409 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 CNOT3O75175 753 aaKnown RBP10.67□□□□□ -0.7
VPS53-207ENST00000570510 USP1O94782 785 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 KLHL18O94889 574 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 H2AFZP0C0S5 128 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 KLK2P20151 261 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 IL1R2P27930 398 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 TNFSF10P50591 281 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 TBX2Q13207 712 aaPredicted RBP10.67□□□□□ -0.7
VPS53-207ENST00000570510 ITGA9Q13797 1035 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 C3AR1Q16581 482 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 ZNF449Q6P9G9 518 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 KIRREL2Q6UWL6 708 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 SHISA6Q6ZSJ9 500 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 H2AFVQ71UI9 128 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 NT5DC3Q86UY8 548 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 VSIG1Q86XK7 387 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 TGIF2LYQ8IUE0 185 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 KBTBD2Q8IY47 623 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 CFAP206Q8IYR0 622 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 CCDC170Q8IYT3 715 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 C19orf47Q8N9M1 422 aaKnown RBP10.67□□□□□ -0.7
VPS53-207ENST00000570510 TRIM56Q9BRZ2 755 aaKnown RBP10.67□□□□□ -0.7
VPS53-207ENST00000570510 CCM2Q9BSQ5 444 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 PITPNM3Q9BZ71 974 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 PCDH18Q9HCL0 1135 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 LUC7LQ9NQ29 371 aaKnown RBP10.67□□□□□ -0.7
VPS53-207ENST00000570510 ABHD10Q9NUJ1 306 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 TAS2R14Q9NYV8 317 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS53-207ENST00000570510 PTGFRNQ9P2B2 879 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 MYO1AQ9UBC5 1043 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 TINAGQ9UJW2 476 aa10.67□□□□□ -0.7
VPS53-207ENST00000570510 A0A087X0T9 212 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 C17orf113A0A1B0GUU1 675 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 BTN3A3O00478 584 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 UGT1A9O60656 530 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 F10P00742 488 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 FAM228BP0C875 321 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 UGT1A6P19224 532 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 UGT1A1P22309 533 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 UGT1A4P22310 534 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 SPAM1P38567 509 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 ARHGAP25P42331 645 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 SRSF11Q05519 484 aaKnown RBP10.66□□□□□ -0.7
VPS53-207ENST00000570510 SPESP1Q6UW49 350 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 FAM151BQ6UXP7 276 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 TTLL10Q6ZVT0 673 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 AMIGO1Q86WK6 493 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 RHOT2Q8IXI1 618 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 EID3Q8N140 333 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 OR2L2Q8NH16 312 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 LRRN4Q8WUT4 740 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 CTNNBL1Q8WYA6 563 aaPredicted RBP10.66□□□□□ -0.7
VPS53-207ENST00000570510 FATE1Q969F0 183 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 FKBP10Q96AY3 582 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 CCDC42Q96M95 316 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 TSGA13Q96PP4 275 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 TRIM5Q9C035 493 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 SOX17Q9H6I2 414 aaPredicted RBP10.66□□□□□ -0.7
VPS53-207ENST00000570510 WDR54Q9H977 334 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 UGT1A7Q9HAW7 530 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 UGT1A10Q9HAW8 530 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 UGT1A8Q9HAW9 530 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 ZNF160Q9HCG1 818 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 ACTR10Q9NZ32 417 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 COQ3Q9NZJ6 369 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 NXT1Q9UKK6 140 aaKnown RBP10.66□□□□□ -0.7
VPS53-207ENST00000570510 TMPRSS11EQ9UL52 423 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 PKP3Q9Y446 797 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 HS3ST3B1Q9Y662 390 aa10.66□□□□□ -0.7
VPS53-207ENST00000570510 GLYATL1P3A0A0U1RQE8 302 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 FOXO6A8MYZ6 492 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 ZNF487B1APH4 448 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 FAM227AF5H4B4 570 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 KCNK1O00180 336 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 MAP2K7O14733 419 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 WFS1O76024 890 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 ALBP02768 609 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 MMP2P08253 660 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 TMEM253P0C7T8 217 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 SKILP12757 684 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 ACPPP15309 386 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 MST1P26927 711 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 ARSFP54793 590 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 MMRN1Q13201 1228 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 HADHQ16836 314 aaKnown RBP10.65□□□□□ -0.7
VPS53-207ENST00000570510 SLC5A12Q1EHB4 618 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 GPRC6AQ5T6X5 926 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 OVCH1Q7RTY7 1134 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 DDHD1Q8NEL9 900 aa10.65□□□□□ -0.7
VPS53-207ENST00000570510 OR11G2Q8NGC1 345 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms