RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ST6GAL1P15907 406 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 TCP1P17987 556 aaKnown RBP19.65■□□□□ 0.74
CLK3-225ENST00000569063 PAMP19021 973 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 F8A1P23610 371 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 ADARP55265 1226 aaKnown RBP19.65■□□□□ 0.74
CLK3-225ENST00000569063 TMED2Q15363 201 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 RNF187Q5TA31 235 aaPredicted RBP19.65■□□□□ 0.74
CLK3-225ENST00000569063 BORAQ6PGQ7 559 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 SPESP1Q6UW49 350 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 UNC5DQ6UXZ4 953 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 STARD8Q92502 1023 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 BIRC8Q96P09 236 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 SERPINB12Q96P63 405 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 OR2A14Q96R47 310 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 SAMD15Q9P1V8 674 aa19.65■□□□□ 0.74
CLK3-225ENST00000569063 TDRKHQ9Y2W6 561 aaKnown RBP19.65■□□□□ 0.74
CLK3-225ENST00000569063 FAM237BA0A1B0GVD1 139 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 USP27XA6NNY8 438 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 PFDN6O15212 129 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 MAP3K7O43318 606 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 NTRK1P04629 796 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 RPN2P04844 631 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 CHRM5P08912 532 aaPredicted RBP19.64■□□□□ 0.73
CLK3-225ENST00000569063 SFTPCP11686 197 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 CDC20Q12834 499 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 CASC4Q6P4E1 433 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 TMEM135Q86UB9 458 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 OTUD6BQ8N6M0 293 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 NAT8LQ8N9F0 302 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 FLVCR1-AS1Q8TAF5 88 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 LPGAT1Q92604 370 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 FANCEQ9HB96 536 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 KCND3Q9UK17 655 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 PCDHGA6Q9Y5G7 932 aa19.64■□□□□ 0.73
CLK3-225ENST00000569063 GOLGA8KD6RF30 607 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 GOLGA8TH3BQL2 631 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 CPNE3O75131 537 aaKnown RBP19.63■□□□□ 0.73
CLK3-225ENST00000569063 SCRG1O75711 98 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 FAM87AP0C7U9 286 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 UGT2B7P16662 529 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 OGNP20774 298 aaKnown RBP19.63■□□□□ 0.73
CLK3-225ENST00000569063 MAGEA3P43357 314 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 EIF3BP55884 814 aaKnown RBP19.63■□□□□ 0.73
CLK3-225ENST00000569063 ABRQ12979 859 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 KYNUQ16719 465 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 ANKRD20A4Q4UJ75 823 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 CTSL3PQ5NE16 218 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 NEPROQ6NW34 567 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 OTOAQ7RTW8 1153 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 CILP2Q8IUL8 1156 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 TMEM126BQ8IUX1 230 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 LRFN5Q96NI6 719 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 TRIM56Q9BRZ2 755 aaKnown RBP19.63■□□□□ 0.73
CLK3-225ENST00000569063 MENTQ9BUN1 341 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 CHRNA10Q9GZZ6 450 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 SPHK1Q9NYA1 384 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 PLAGL1Q9UM63 463 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 PCDHB3Q9Y5E6 796 aa19.63■□□□□ 0.73
CLK3-225ENST00000569063 MRPS18BQ9Y676 258 aaKnown RBP19.63■□□□□ 0.73
CLK3-225ENST00000569063 C21orf140B9A014 251 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 H3BMM5 538 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 GOLGA8MH3BSY2 632 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 ESR1P03372 595 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 PVRP15151 417 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 TCN2P20062 427 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 PKLRP30613 574 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 RAB28P51157 221 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 DHX34Q14147 1143 aaKnown RBP19.62■□□□□ 0.73
CLK3-225ENST00000569063 KIR2DS3Q14952 304 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 PLEKHS1Q5SXH7 462 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 ZNF517Q6ZMY9 492 aaPredicted RBP19.62■□□□□ 0.73
CLK3-225ENST00000569063 HOOK3Q86VS8 718 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 DCUN1D3Q8IWE4 304 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 PPIL6Q8IXY8 311 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 CT55Q8WUE5 264 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 SLCO2A1Q92959 643 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 KLHL25Q9H0H3 589 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 PCYOX1Q9UHG3 505 aa19.62■□□□□ 0.73
CLK3-225ENST00000569063 ZCWPW2A0A1B0GU75 182 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 TMEM150CB9EJG8 249 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 RECKO95980 971 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 PRKAR1AP10644 381 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 OAS2P29728 719 aaKnown RBP19.61■□□□□ 0.73
CLK3-225ENST00000569063 FMO4P31512 558 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 DNASE1L3Q13609 305 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 GRB7Q14451 532 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 PPP1R7Q15435 360 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 ZNF789Q5FWF6 425 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 RNASEH2BQ5TBB1 312 aaKnown RBP19.61■□□□□ 0.73
CLK3-225ENST00000569063 PAPD7Q5XG87 772 aaKnown RBP19.61■□□□□ 0.73
CLK3-225ENST00000569063 CDHR3Q6ZTQ4 885 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 CENPUQ71F23 418 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 AGGF1Q8N302 714 aaeCLIP19.61■□□□□ 0.73
CLK3-225ENST00000569063 C19orf47Q8N9M1 422 aaKnown RBP19.61■□□□□ 0.73
CLK3-225ENST00000569063 SLC38A9Q8NBW4 561 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 OR1L3Q8NH93 324 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 CFAP61Q8NHU2 1237 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 GSDMBQ8TAX9 411 aa19.61■□□□□ 0.73
CLK3-225ENST00000569063 ZNF669Q96BR6 464 aaPredicted RBP19.61■□□□□ 0.73
CLK3-225ENST00000569063 TCTN2Q96GX1 697 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms