RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CKAP2Q8WWK9 683 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 SLCO2A1Q92959 643 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 TPD52L3Q96J77 140 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 RERGLQ9H628 205 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 FBRSL1Q9HCM7 1045 aaKnown RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 HEBP2Q9Y5Z4 205 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ZNF780BQ9Y6R6 833 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 CACNA1BQ00975 2339 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 RGSL1A5PLK6 1076 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 PRAMEF26H0Y7S4 382 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 K7EPI3 171 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 LIN7AO14910 233 aaPredicted RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 UBOX5O94941 541 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 KRT16P08779 473 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 RPSAP08865 295 aaKnown RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 ZDHHC11BP0C7U3 371 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 COL6A2P12110 1019 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 POU1F1P28069 291 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ANXA11P50995 505 aaKnown RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 CTSCP53634 463 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 CASP9P55211 416 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 OCA2Q04671 838 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 LCP2Q13094 533 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 FLOT2Q14254 428 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 NDUFA9Q16795 377 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 DEFB110Q30KQ9 67 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 IL23RQ5VWK5 629 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 SLC36A4Q6YBV0 504 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 GCNT7Q6ZNI0 430 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 FAM92BQ6ZTR7 304 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 PGBD5Q8N414 524 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 USP7Q93009 1102 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 SLC22A18Q96BI1 424 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 OR51B5Q9H339 312 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 ITM2CQ9NQX7 267 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 THAP10Q9P2Z0 257 aaPredicted RBP9.04□□□□□ -0.96
VPS39-205ENST00000562258 CACNA1IQ9P0X4 2223 aa9.04□□□□□ -0.96
VPS39-205ENST00000562258 NDUFS4O43181 175 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 TNFRSF4P43489 277 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 AGTR2P50052 363 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 SLC16A1P53985 500 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 KIAA1161Q6NSJ0 714 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 C16orf89Q6UX73 402 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 TMC8Q8IU68 726 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 ZC3H7AQ8IWR0 971 aaKnown RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 FAM20CQ8IXL6 584 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 CLEC4FQ8N1N0 589 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 PLD6Q8N2A8 252 aaKnown RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 PPCDCQ96CD2 204 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 LRTM1Q9HBL6 345 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 DDX18Q9NVP1 670 aaKnown RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 NUDT4Q9NZJ9 180 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 LHX3Q9UBR4 397 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 HCN2Q9UL51 889 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 PCDHGA11Q9Y5H2 935 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 EIF4E1BA6NMX2 242 aaKnown RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 A8MUI8 341 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 CLDN4O14493 209 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 MAP2K7O14733 419 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 NOL3O60936 208 aaKnown RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 SEC24DO94855 1032 aaPredicted RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 CCNDBP1O95273 360 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 AQP1P29972 269 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 OC90Q02509 493 aaPredicted RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 TTC29Q8NA56 475 aaPredicted RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 FBXO30Q8TB52 745 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 XAGE5Q8WWM1 108 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 SLC9A6Q92581 669 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 TMEM237Q96Q45 408 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 HAUS8Q9BT25 410 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 CCDC90BQ9GZT6 254 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 RETREG1Q9H6L5 497 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 ACTR5Q9H9F9 607 aaPredicted RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 SARDHQ9UL12 918 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 CORO1CQ9ULV4 474 aaPredicted RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 SCML1Q9UN30 329 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 MYOCOSA0A1B0GUC4 107 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 PDE5AO76074 875 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 PROCP04070 461 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 MSX2P35548 267 aaPredicted RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 TGFBIQ15582 683 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 TMEM196Q5HYL7 178 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 POMZP3Q6PJE2 187 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 DCUN1D3Q8IWE4 304 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 GALNT4Q8N4A0 578 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 EID2Q8N6I1 236 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 OR52E6Q96RD3 313 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 ING2Q9H160 280 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 C6orf106Q9H6K1 298 aaPredicted RBP9.03□□□□□ -0.96
VPS39-205ENST00000562258 PCDHB11Q9Y5F2 797 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 PIEZO1Q92508 2521 aa9.03□□□□□ -0.96
VPS39-205ENST00000562258 TCRBV5S1A1TA0A578 114 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 FAM159BA6NKW6 160 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 LOC730098B7Z3J9 87 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 S1PR4O95977 384 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 KLK3P07288 261 aaPredicted RBP9.02□□□□□ -0.96
VPS39-205ENST00000562258 ENO2P09104 434 aaPredicted RBP9.02□□□□□ -0.96
VPS39-205ENST00000562258 NDUFV2P19404 249 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 ACRV1P26436 265 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 IRF4Q15306 451 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms