RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CCNDBP1O95273 360 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 GUCA1CO95843 209 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 UMPSP11172 480 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 HSD17B1P14061 328 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 JUPP14923 745 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 ACADSP16219 412 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 GPX3P22352 226 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PPIBP23284 216 aaKnown RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 P2RY2P41231 377 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 KCNC1P48547 511 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 HSPA7P48741 367 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 HK3P52790 923 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 C21orf58P58505 322 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 B4GALNT1Q00973 533 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 LRP8Q14114 963 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 E2F2Q14209 437 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 TRIM25Q14258 630 aaKnown RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 INPP5AQ14642 412 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 KPNB1Q14974 876 aaKnown RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 RCN1Q15293 331 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 MUM1Q2TAK8 710 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 GAB4Q2WGN9 574 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PIGGQ5H8A4 983 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 WLSQ5T9L3 541 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 FRG2Q64ET8 278 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 TRIM68Q6AZZ1 485 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 REP15Q6BDI9 236 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 CLEC6AQ6EIG7 209 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 GRHL2Q6ISB3 625 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 BLOC1S3Q6QNY0 202 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 RIPOR1Q6ZS17 1223 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 AMZ2Q86W34 360 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 C12orf40Q86WS4 652 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 ZFAND4Q86XD8 727 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PROSER1Q86XN7 944 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 MYLK4Q86YV6 388 aaPredicted RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 AQP12AQ8IXF9 295 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 KRT78Q8N1N4 520 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 SYNPOQ8N3V7 929 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 C12orf76Q8N812 135 aaPredicted RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 CDYL2Q8N8U2 506 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 SNX31Q8N9S9 440 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 AVL9Q8NBF6 648 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 VPS37AQ8NEZ2 397 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 OR4F6Q8NGB9 312 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 OR8J3Q8NGG0 315 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 VOPP1Q96AW1 172 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 RCN3Q96D15 328 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 SPDL1Q96EA4 605 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 CMTM7Q96FZ5 175 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 COX14Q96I36 57 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 FRG2BQ96QU4 278 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 FAM129BQ96TA1 746 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 SLC30A3Q99726 388 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 SPATA9Q9BWV2 254 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 S1PR5Q9H228 398 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 IGFLR1Q9H665 355 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 LRTM1Q9HBL6 345 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PRSS16Q9NQE7 514 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 CCDC167Q9P0B6 97 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 ABCD2Q9UBJ2 740 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 PDE10AQ9Y233 779 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 POMPQ9Y244 141 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 RUVBL1Q9Y265 456 aaKnown RBP7.34□□□□□ -1.23
VPS39-204ENST00000561818 FIS1Q9Y3D6 152 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 DYRK1BQ9Y463 629 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 L3MBTL1Q9Y468 752 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 GPR45Q9Y5Y3 372 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 ST14Q9Y5Y6 855 aa7.34□□□□□ -1.23
VPS39-204ENST00000561818 LRRC72A6NJI9 287 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 IQCF5A8MTL0 148 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 FADS2P1A8MWK0 482 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 TMEM233B4DJY2 109 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 H0YJX3 145 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 CACNB4O00305 520 aaPredicted RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 FOXE1O00358 373 aaPredicted RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 NRG2O14511 850 aaPredicted RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 OR7A17O14581 309 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PLRG1O43660 514 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 RNGTTO60942 597 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 ERN1O75460 977 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 OR4F21O95013 312 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 FKBP9O95302 570 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 GPIP06744 558 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 SLC35G4P0C7Q5 338 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PRSS56P0CW18 603 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 ACADMP11310 421 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 MYCLP1P12525 358 aaPredicted RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 SLC2A4P14672 509 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PRPS1L1P21108 318 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 HTR1BP28222 390 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 IL12RB1P42701 662 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 CPA2P48052 419 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 POLR2JP52435 117 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 ARFIP1P53367 373 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 EEFSECP57772 596 aaKnown RBP7.33□□□□□ -1.24
VPS39-204ENST00000561818 ERVPABLB-1P60509 514 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 PSME3P61289 254 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 SLC25A3Q00325 362 aa7.33□□□□□ -1.24
VPS39-204ENST00000561818 IRF8Q02556 426 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms