RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 DNAJC22Q8N4W6 341 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 CISD2Q8N5K1 135 aaKnown RBP15.86■□□□□ 0.13
CLN3-208ENST00000561505 KRT35Q92764 455 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 PTERQ96BW5 349 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 SPATA13Q96N96 652 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 APOL2Q9BQE5 337 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 AP1M1Q9BXS5 423 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 SPRTNQ9H040 489 aaPredicted RBP15.86■□□□□ 0.13
CLN3-208ENST00000561505 FAM96AQ9H5X1 160 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 VPS37BQ9H9H4 285 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 SLC22A11Q9NSA0 550 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 NLE1Q9NVX2 485 aaPredicted RBP15.86■□□□□ 0.13
CLN3-208ENST00000561505 P4HTMQ9NXG6 502 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 OR6C2Q9NZP2 312 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 NTNG1Q9Y2I2 539 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 PCDHGA10Q9Y5H3 936 aa15.86■□□□□ 0.13
CLN3-208ENST00000561505 PCM1Q15154 2024 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 A1L4Q6 167 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 LIN7AO14910 233 aaPredicted RBP15.85■□□□□ 0.13
CLN3-208ENST00000561505 OR2B3O76000 313 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 ALPPP05187 535 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 UMODP07911 640 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 UGT2B7P16662 529 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 MC4RP32245 332 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 SHMT2P34897 504 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 OTUD4Q01804 1114 aaKnown RBP15.85■□□□□ 0.13
CLN3-208ENST00000561505 SLC5A12Q1EHB4 618 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 ZNF787Q6DD87 383 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 TLDC1Q6P9B6 456 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 PIANPQ8IYJ0 282 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 CLDN19Q8N6F1 224 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 CLEC1AQ8NC01 280 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 TBL1YQ9BQ87 522 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 HEMGNQ9BXL5 484 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 KLHL25Q9H0H3 589 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 XKR8Q9H6D3 395 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 SPHK1Q9NYA1 384 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 POLG2Q9UHN1 485 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 SRPK3Q9UPE1 567 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 PCDHA3Q9Y5H8 950 aa15.85■□□□□ 0.13
CLN3-208ENST00000561505 ANKRD12Q6UB98 2062 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 SLC5A10A0PJK1 596 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 ANKUB1A6NFN9 424 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 ENO4A6NNW6 628 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 H7C0C1 242 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 PJA2O43164 708 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 ZNF189O75820 626 aaPredicted RBP15.84■□□□□ 0.13
CLN3-208ENST00000561505 CTSBP07858 339 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 CHRM5P08912 532 aaPredicted RBP15.84■□□□□ 0.13
CLN3-208ENST00000561505 RBP3P10745 1247 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 COL8A1P27658 744 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 OTX2P32243 289 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 CTNNA1P35221 906 aaKnown RBP15.84■□□□□ 0.13
CLN3-208ENST00000561505 ATP5OP48047 213 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 PRKG2Q13237 762 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 PRPSAP1Q14558 356 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 NKAIN1Q4KMZ8 207 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 ZNF449Q6P9G9 518 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 PACS1Q6VY07 963 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 CUZD1Q86UP6 607 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 CNGA4Q8IV77 575 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 CDKL3Q8IVW4 592 aaPredicted RBP15.84■□□□□ 0.13
CLN3-208ENST00000561505 OR5AR1Q8NGP9 310 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 CDKN2AIPNLQ96HQ2 116 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 DNAJC1Q96KC8 554 aaKnown RBP15.84■□□□□ 0.13
CLN3-208ENST00000561505 FERMT1Q9BQL6 677 aa15.84■□□□□ 0.13
CLN3-208ENST00000561505 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-208ENST00000561505 PTRH2Q9Y3E5 179 aaKnown RBP15.84■□□□□ 0.13
CLN3-208ENST00000561505 COPG1Q9Y678 874 aaKnown RBP15.84■□□□□ 0.13
CLN3-208ENST00000561505 A0A0J9YY10 115 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 BHMG1C9JSJ3 638 aaPredicted RBP15.83■□□□□ 0.12
CLN3-208ENST00000561505 AGPSO00116 658 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 QSOX1O00391 747 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 PEX12O00623 359 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 ZSCAN9O15535 394 aaPredicted RBP15.83■□□□□ 0.12
CLN3-208ENST00000561505 AP2A1O95782 977 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 TPM1P09493 284 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 ITGAXP20702 1163 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 FOLR3P41439 243 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 NSG1P42857 185 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 MAGEA1P43355 309 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 TMPRSS15P98073 1019 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 PLOD1Q02809 727 aaPredicted RBP15.83■□□□□ 0.12
CLN3-208ENST00000561505 RAPSNQ13702 412 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 ITIH4Q14624 930 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 DBN1Q16643 649 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 MLIPQ5VWP3 458 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 LYPLAL1Q5VWZ2 237 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 CCDC50Q8IVM0 306 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 TMEM151BQ8IW70 566 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 TTC13Q8NBP0 860 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 ST6GALNAC3Q8NDV1 305 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 OR5K2Q8NHB8 316 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 UBE2Q2Q8WVN8 375 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 TM9SF4Q92544 642 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 FKBP10Q96AY3 582 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 C5orf34Q96MH7 638 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 HGH1Q9BTY7 390 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 MENTQ9BUN1 341 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 SLC7A5P2Q9GIP4 190 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 301.3 ms