RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SLC35G4P0C7Q5 338 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 TSPAN8P19075 237 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 IDSP22304 550 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 MPSTP25325 297 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 MAOBP27338 520 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 RPL10P27635 214 aaKnown RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 GGT5P36269 586 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 BDKRB1P46663 353 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 HSPA7P48741 367 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 HNMTP50135 292 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 CLCNKAP51800 687 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 CLCQ05315 142 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 LRP8Q14114 963 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 CCSMST1Q4G0I0 132 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 CAPRIN2Q6IMN6 1127 aaKnown RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 UNC5DQ6UXZ4 953 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 WDR5BQ86VZ2 330 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 EGFL6Q8IUX8 553 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 HID1Q8IV36 788 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 C1orf210Q8IVY1 113 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 WDR75Q8IWA0 830 aaKnown RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 TMEFF1Q8IYR6 380 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 ANKS4BQ8N8V4 417 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 MFSD2AQ8NA29 543 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 FBXO15Q8NCQ5 510 aaPredicted RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 RFWD2Q8NHY2 731 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 UBTD2Q8WUN7 234 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 TFGQ92734 400 aaPredicted RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 RMDN2Q96LZ7 410 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 CCDC138Q96M89 665 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 SH3GL3Q99963 347 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 TMEM79Q9BSE2 394 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 SHCBP1LQ9BZQ2 653 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 CD244Q9BZW8 370 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 WWP1Q9H0M0 922 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 DUSP15Q9H1R2 295 aaPredicted RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 SEMA4BQ9NPR2 832 aaPredicted RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 ZDHHC2Q9UIJ5 367 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 DCTN4Q9UJW0 460 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 ASF1AQ9Y294 204 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.94□□□□□ -0.66
USP3-218ENST00000560202 ST14Q9Y5Y6 855 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 DGKBQ9Y6T7 804 aa10.94□□□□□ -0.66
USP3-218ENST00000560202 A0A1W2PR77 199 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 KRT87PA6NCN2 255 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 UBFD1O14562 309 aaKnown RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 RASGRP1O95267 797 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 TNFP01375 233 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 CD38P28907 300 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 SCTRP47872 440 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 RPL14P50914 215 aaKnown RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 RACK1P63244 317 aaKnown RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 CTBSQ01459 385 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 LCP2Q13094 533 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 EIF2B5Q13144 721 aaKnown RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 FZD2Q14332 565 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 ZXDCQ2QGD7 858 aaPredicted RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 METTL2BQ6P1Q9 378 aaKnown RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 CUZD1Q86UP6 607 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 LONP2Q86WA8 852 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 DCP2Q8IU60 420 aaKnown RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 MAML2Q8IZL2 1156 aaPredicted RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 TMEM105Q8N8V8 129 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 CCDC197Q8NCU1 140 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 AGR3Q8TD06 166 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 TRPC4APQ8TEL6 797 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 FBXL8Q96CD0 374 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 PKP4Q99569 1192 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 HGH1Q9BTY7 390 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 TMEM168Q9H0V1 697 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 MIR1-1HGQ9H1L0 117 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 ZBTB26Q9HCK0 441 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 TRNAU1APQ9NX07 287 aaKnown RBP10.93□□□□□ -0.66
USP3-218ENST00000560202 WDR37Q9Y2I8 494 aa10.93□□□□□ -0.66
USP3-218ENST00000560202 A0A0G2JND7 137 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 K7EPI3 171 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 PPP6CO00743 305 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 CCNT2O60583 730 aaKnown RBP10.92□□□□□ -0.66
USP3-218ENST00000560202 STK16O75716 305 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 MLYCDO95822 493 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 WNT1P04628 370 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 GDF5P43026 501 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 SH3BP2P78314 561 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 CSTF1Q05048 431 aaKnown RBP10.92□□□□□ -0.66
USP3-218ENST00000560202 GTF2H2Q13888 395 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 SH2D4BQ5SQS7 431 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 GTF2H2CQ6P1K8 395 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 TTC23LQ6PF05 361 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 GOLGA7Q7Z5G4 137 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 IQCHQ86VS3 1027 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 RGL4Q8IZJ4 473 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 TEX9Q8N6V9 391 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 PHC3Q8NDX5 983 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 OR5AR1Q8NGP9 310 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 OR9A1PQ8NGU1 263 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 C1orf216Q8TAB5 229 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 ATL1Q8WXF7 558 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 DNASE2BQ8WZ79 361 aa10.92□□□□□ -0.66
USP3-218ENST00000560202 INSM2Q96T92 566 aaPredicted RBP10.92□□□□□ -0.66
USP3-218ENST00000560202 SIKE1Q9BRV8 207 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms