RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FGF21Q9NSA1 209 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 LIPT2A6NK58 231 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 MPTX1A8MV57 137 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 RTL8CO15255 209 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 HPRP00739 348 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 DUX4L4P0CJ87 422 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 MELKQ14680 651 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 KRTAP5-2Q701N4 177 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 FAM114A1Q8IWE2 563 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 NUP37Q8NFH4 326 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 GPRC5AQ8NFJ5 357 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 MYRIPQ8NFW9 859 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 NUP85Q9BW27 656 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 PPANQ9NQ55 473 aaKnown RBP3.66□□□□□ -1.82
VPS13C-208ENST00000559119 PAG1Q9NWQ8 432 aa3.66□□□□□ -1.82
VPS13C-208ENST00000559119 PRRC2AP48634 2157 aaKnown RBP3.66□□□□□ -1.82
VPS13C-208ENST00000559119 ANKRD61A6NGH8 418 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 ASB14A6NK59 587 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 RSL1D1O76021 490 aaKnown RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 PSMA4P25789 261 aaKnown RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 SLC6A6P31641 620 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 PRAMEP78395 509 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 LY6DQ14210 128 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 KRT33BQ14525 404 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 TSTQ16762 297 aaKnown RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 MTHFSDQ2M296 383 aaKnown RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 ASTE1Q2TB18 679 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 TICAM1Q8IUC6 712 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 SMAP1Q8IYB5 467 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 TRIML1Q8N9V2 468 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 OR6S1Q8NH40 331 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 PHLDA1Q8WV24 401 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 ERLEC1Q96DZ1 483 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 CHMP1AQ9HD42 196 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-208ENST00000559119 TAS2R14Q9NYV8 317 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 OR6C2Q9NZP2 312 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 RHCGQ9UBD6 479 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 CACNG4Q9UBN1 327 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 PRO0461Q9UI25 63 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 SESN1Q9Y6P5 492 aa3.65□□□□□ -1.83
VPS13C-208ENST00000559119 HYKKA2RU49 373 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 SSX4O60224 188 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 RTN3O95197 1032 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-208ENST00000559119 IGHV4-31P0DP07 118 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 DLG2Q15700 870 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 SEL1L3Q68CR1 1132 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 BTN2A1Q7KYR7 527 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 COMMD2Q86X83 199 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 OR13J1Q8NGT2 312 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 MAPK15Q8TD08 544 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 IRGQQ8WZA9 623 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 ZNF486Q96H40 463 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-208ENST00000559119 SLC45A3Q96JT2 553 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 AGAP4Q96P64 663 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 CPVLQ9H3G5 476 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 MTUS1Q9ULD2 1270 aa3.64□□□□□ -1.83
VPS13C-208ENST00000559119 RNASEH1O60930 286 aaKnown RBP3.63□□□□□ -1.83
VPS13C-208ENST00000559119 TPPPO94811 219 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 ATP1A3P13637 1013 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 LHCGRP22888 699 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 PON1P27169 355 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 PIK3R1P27986 724 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 PPARGP37231 505 aaPredicted RBP3.63□□□□□ -1.83
VPS13C-208ENST00000559119 SQLEQ14534 574 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 ZRSR2Q15696 482 aaKnown RBP3.63□□□□□ -1.83
VPS13C-208ENST00000559119 C15orf32Q32M92 178 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 FAM98BQ52LJ0 330 aaKnown RBP3.63□□□□□ -1.83
VPS13C-208ENST00000559119 KLHL35Q6PF15 583 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 INTS8Q75QN2 995 aaKnown RBP3.63□□□□□ -1.83
VPS13C-208ENST00000559119 CFAP206Q8IYR0 622 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 CDK20Q8IZL9 346 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 ABCA7Q8IZY2 2146 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 RFFLQ8WZ73 363 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 OR6C1Q96RD1 312 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 C16orf70Q9BSU1 422 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 MED20Q9H944 212 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 DIAPH3Q9NSV4 1193 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 P4HTMQ9NXG6 502 aa3.63□□□□□ -1.83
VPS13C-208ENST00000559119 ACOD1A6NK06 481 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 A8MZ25 164 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 AVILO75366 819 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 DDX58O95786 925 aaKnown RBP3.62□□□□□ -1.83
VPS13C-208ENST00000559119 RARGP13631 454 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 RPL21P46778 160 aaKnown RBP3.62□□□□□ -1.83
VPS13C-208ENST00000559119 ITPRIPL2Q3MIP1 535 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 KIAA0930Q6ICG6 404 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-208ENST00000559119 TMEM154Q6P9G4 183 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 SLC25A47Q6Q0C1 308 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 TMEM207Q6UWW9 146 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 KIF6Q6ZMV9 814 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 CLEC17AQ6ZS10 378 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 SLC47A2Q86VL8 602 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 TMEM139Q8IV31 216 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 MCEMP1Q8IX19 187 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 EID3Q8N140 333 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 AQP11Q8NBQ7 271 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 LRRC15Q8TF66 581 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 CMTM3Q96MX0 182 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 NECTIN4Q96NY8 510 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 URM1Q9BTM9 101 aaKnown RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms