RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 GSTO2Q9H4Y5 243 aa9.95□□□□□ -0.82
SRP54-208ENST00000555557 GEMIN8Q9NWZ8 242 aaKnown RBP9.95□□□□□ -0.82
SRP54-208ENST00000555557 DNAJC28Q9NX36 388 aa9.95□□□□□ -0.82
SRP54-208ENST00000555557 ACSL5Q9ULC5 683 aa9.95□□□□□ -0.82
SRP54-208ENST00000555557 PLAGL1Q9UM63 463 aa9.95□□□□□ -0.82
SRP54-208ENST00000555557 DGKBQ9Y6T7 804 aa9.95□□□□□ -0.82
SRP54-208ENST00000555557 IFRD1O00458 451 aaPredicted RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 UBFD1O14562 309 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 BCAT2O15382 392 aaPredicted RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 HSPA4LO95757 839 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 CATP04040 527 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 ENO2P09104 434 aaPredicted RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 RCN2Q14257 317 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PLK5Q496M5 336 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 LYSMD4Q5XG99 296 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PMS2CLQ68D20 193 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 SULT1C3Q6IMI6 304 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 CAPRIN2Q6IMN6 1127 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 BMP8AQ7Z5Y6 402 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PHACTR4Q8IZ21 702 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 ZNF781Q8N8C0 355 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PPFIBP2Q8ND30 876 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 TRPC4APQ8TEL6 797 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PPP4R1Q8TF05 950 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PYCR2Q96C36 320 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 ELAC2Q9BQ52 826 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 ZBTB26Q9HCK0 441 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 TNFRSF12AQ9NP84 129 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 SEMA4BQ9NPR2 832 aaPredicted RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 C11orf16Q9NQ32 467 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 IMP3Q9NV31 184 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 PNPOQ9NVS9 261 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 WWOXQ9NZC7 414 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 FBXO4Q9UKT5 387 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 TDRKHQ9Y2W6 561 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 A0A1B0GTL3 188 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 KLHL33A6NCF5 533 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PABPN1LA6NDY0 278 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 TMEM114B3SHH9 223 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 STX16-NPEPL1H3BU86 382 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 E2F3O00716 465 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 STX16O14662 325 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 CCNT2O60583 730 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 KCNJ13O60928 360 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 H2AFYO75367 372 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 SLC16A8O95907 504 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 FAM107AO95990 144 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 JUNDP17535 347 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 MPSTP25325 297 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 CLCQ05315 142 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 ASPHQ12797 758 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 UAP1L1Q3KQV9 507 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PRRT3Q5FWE3 981 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 ANKS6Q68DC2 871 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 FRMD7Q6ZUT3 714 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 IQCHQ86VS3 1027 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 SFTPA2Q8IWL1 248 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 FAM174AQ8TBP5 190 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 CNDP1Q96KN2 507 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 C7orf26Q96N11 449 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 IL17FQ96PD4 163 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 FERD3LQ96RJ6 166 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 ABCF3Q9NUQ8 709 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 TRNAU1APQ9NX07 287 aaKnown RBP9.94□□□□□ -0.82
SRP54-208ENST00000555557 ZDHHC2Q9UIJ5 367 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 PCTPQ9UKL6 214 aa9.94□□□□□ -0.82
SRP54-208ENST00000555557 LAMA1P25391 3075 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 THADAQ6YHU6 1953 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 A0A1B0GVT2 93 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 NPHS1O60500 1241 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 RPS17P08708 135 aaKnown RBP9.93□□□□□ -0.82
SRP54-208ENST00000555557 SP9P0CG40 484 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 CTSEP14091 401 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 PRDX3P30048 256 aaKnown RBP9.93□□□□□ -0.82
SRP54-208ENST00000555557 AFF3P51826 1226 aaKnown RBP9.93□□□□□ -0.82
SRP54-208ENST00000555557 AP1S2P56377 157 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 NXPH1P58417 271 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 CDKL1Q00532 357 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 ILF3Q12906 894 aaKnown RBP eCLIP9.93□□□□□ -0.828e-7■■■□□ 18.6
SRP54-208ENST00000555557 LRP8Q14114 963 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 PCBP2Q15366 365 aaKnown RBP eCLIP9.93□□□□□ -0.823e-6■■■■□ 22.2
SRP54-208ENST00000555557 ANGPT1Q15389 498 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 PTCHD3Q3KNS1 767 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 UNC5DQ6UXZ4 953 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 CEP68Q76N32 757 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 DCP2Q8IU60 420 aaKnown RBP9.93□□□□□ -0.82
SRP54-208ENST00000555557 CRLF3Q8IUI8 442 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 C2orf73Q8N5S3 287 aaPredicted RBP9.93□□□□□ -0.82
SRP54-208ENST00000555557 TEX9Q8N6V9 391 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 DCBLD1Q8N8Z6 715 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 OR5K2Q8NHB8 316 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 RFWD2Q8NHY2 731 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 GPBAR1Q8TDU6 330 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 ZNF473Q8WTR7 871 aaKnown RBP9.93□□□□□ -0.82
SRP54-208ENST00000555557 CCDC138Q96M89 665 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 HGH1Q9BTY7 390 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 CD244Q9BZW8 370 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 NPHS2Q9NP85 383 aa9.93□□□□□ -0.82
SRP54-208ENST00000555557 STOX2Q9P2F5 926 aaPredicted RBP9.93□□□□□ -0.82
SRP54-208ENST00000555557 APOBEC3BQ9UH17 382 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms