RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PKD1L2Q7Z442 2459 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 FREM2Q5SZK8 3169 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 KRT87PA6NCN2 255 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 TNFSF15O95150 251 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 C1QAP02745 245 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 JMJD7P0C870 316 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 MCM3P25205 808 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 CSTF2P33240 577 aaKnown RBP eCLIP13.7□□□□□ -0.22
PTCH1-226ENST00000553011 GRB7Q14451 532 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 CCSMST1Q4G0I0 132 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 HECTD2Q5U5R9 776 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 CACHD1Q5VU97 1274 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 ARMC6Q6NXE6 501 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 SLC26A11Q86WA9 606 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 ZC3HC1Q86WB0 502 aaKnown RBP13.7□□□□□ -0.22
PTCH1-226ENST00000553011 AMIGO1Q86WK6 493 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 DCUN1D3Q8IWE4 304 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 ADGRF3Q8IZF5 1079 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 LMNTD1Q8N9Z9 388 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 AGBL5Q8NDL9 886 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 ZCCHC14Q8WYQ9 949 aaKnown RBP13.7□□□□□ -0.22
PTCH1-226ENST00000553011 ZDHHC12Q96GR4 267 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 PPM1MQ96MI6 270 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 FMO2Q99518 471 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 MAP3K3Q99759 626 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 ASCL3Q9NQ33 180 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 OCIAD1Q9NX40 245 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 TAS2R13Q9NYV9 303 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 AKAP7Q9P0M2 348 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-226ENST00000553011 TRMT6Q9UJA5 497 aaKnown RBP13.7□□□□□ -0.22
PTCH1-226ENST00000553011 DMXL2Q8TDJ6 3036 aa13.7□□□□□ -0.22
PTCH1-226ENST00000553011 ASPMQ8IZT6 3477 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 IGHV5-51A0A0C4DH38 117 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 GSAPA4D1B5 854 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 FAM159BA6NKW6 160 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 RASSF9O75901 435 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 MATN4O95460 622 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 C1orf105O95561 183 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 RPN2P04844 631 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 FGF3P11487 239 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-226ENST00000553011 FDXRP22570 491 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 PKLRP30613 574 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 SHMT2P34897 504 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 SEPHS1P49903 392 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 KPNA2P52292 529 aaKnown RBP13.69□□□□□ -0.22
PTCH1-226ENST00000553011 MAPK10P53779 464 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 PRKAA1Q13131 559 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 KYNUQ16719 465 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 KBTBD12Q3ZCT8 623 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 TEX35Q5T0J7 233 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 FBXO38Q6PIJ6 1188 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 PAQR3Q6TCH7 311 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 CYS1Q717R9 158 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 PIWIL4Q7Z3Z4 852 aaKnown RBP13.69□□□□□ -0.22
PTCH1-226ENST00000553011 PRSS42Q7Z5A4 293 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 IFT20Q8IY31 132 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 FBF1Q8TES7 1133 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 CDKL2Q92772 493 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 ELMO2Q96JJ3 720 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 FOPNLQ96NB1 174 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 SLC46A1Q96NT5 459 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 IL17FQ96PD4 163 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 OLFM1Q99784 485 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 MENTQ9BUN1 341 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 NSMCE4AQ9NXX6 385 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 NINJ2Q9NZG7 142 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 DKK4Q9UBT3 224 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 CORO1CQ9ULV4 474 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-226ENST00000553011 NFU1Q9UMS0 254 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 VWA7Q9Y334 891 aa13.69□□□□□ -0.22
PTCH1-226ENST00000553011 CACNA1BQ00975 2339 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 PTPRQQ9UMZ3 2332 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 FAM95CA0A1B0GW59 222 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 EFCAB7A8K855 629 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 ARHGEF33A8MVX0 844 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 TAF4O00268 1085 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 TLX3O43711 291 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-226ENST00000553011 DXOO77932 396 aaKnown RBP13.68□□□□□ -0.22
PTCH1-226ENST00000553011 ANKRD34CP0C6C1 535 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 MPC1LP0DKB6 136 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 ENO3P13929 434 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-226ENST00000553011 SAT1P21673 171 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 CD9P21926 228 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 RBMS1P29558 406 aaKnown RBP13.68□□□□□ -0.22
PTCH1-226ENST00000553011 EFTUD2Q15029 972 aaKnown RBP eCLIP13.68□□□□□ -0.22
PTCH1-226ENST00000553011 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.68□□□□□ -0.22
PTCH1-226ENST00000553011 FAM45BPQ6NSW5 357 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 UGT3A1Q6NUS8 523 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 CYHR1Q6ZMK1 362 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 CEP128Q6ZU80 1094 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 NEK10Q6ZWH5 1172 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 FAM129CQ86XR2 697 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 CTAGE3PQ8IX95 158 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 LSMEM2Q8N112 164 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 FAM45AQ8TCE6 357 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 EEF1AKMT1Q8WVE0 214 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 PMEPA1Q969W9 287 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 VPS39Q96JC1 886 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 MCMBPQ9BTE3 642 aa13.68□□□□□ -0.22
PTCH1-226ENST00000553011 CDC42EP4Q9H3Q1 356 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms