RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	RDH11	Q8TC12	318 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	SAP25	Q8TEE9	199 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	ATL1	Q8WXF7	558 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	ASB11	Q8WXH4	323 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	RAD51AP1	Q96B01	352 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	SH3KBP1	Q96B97	665 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	FAM111A	Q96PZ2	611 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	RAB11FIP5	Q9BXF6	653 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	TMEM9B	Q9NQ34	198 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	ZNF358	Q9NW07	568 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	ARL15	Q9NXU5	204 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	UTP6	Q9NYH9	597 aa	Known RBP	11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	NUDT4	Q9NZJ9	180 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	TMEM216	Q9P0N5	145 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	ST14	Q9Y5Y6	855 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	CABIN1	Q9Y6J0	2220 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	CACNA1H	O95180	2353 aa		11.59	□□□□□ -0.55
DDB1-223	ENST00000543658	TMEM120B	A0PK00	339 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658		A6NCN8	305 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	NCF1B	A6NI72	391 aa	Predicted RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	RHPN2P1	A8MT19	583 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	NCF1C	A8MVU1	366 aa	Predicted RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	ARHGEF33	A8MVX0	844 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	TK2	O00142	265 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	FLRT2	O43155	660 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	ZW10	O43264	779 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PCDHGA12	O60330	932 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	TPBGL	P0DKB5	382 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	NCF1	P14598	390 aa	Predicted RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	CREB1	P16220	341 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	RPA3	P35244	121 aa	Predicted RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	DAB2	P98082	770 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	ASPH	Q12797	758 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PRKG2	Q13237	762 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	OR4D1	Q15615	310 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	C14orf28	Q4W4Y0	310 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	C16orf46	Q6P387	395 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SBSN	Q6UWP8	590 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	XKR5	Q6UX68	686 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PRR23C	Q6ZRP0	262 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SH2D5	Q6ZV89	423 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	ISCA2	Q86U28	154 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	TAX1BP1	Q86VP1	789 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SPNS2	Q8IVW8	549 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	TCAIM	Q8N3R3	496 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SFRP1	Q8N474	314 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	FBXO39	Q8N4B4	442 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	ARMC2	Q8NEN0	867 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	OR9A1P	Q8NGU1	263 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	OR4C6	Q8NH72	309 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	MGARP	Q8TDB4	240 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SLC37A2	Q8TED4	501 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PTER	Q96BW5	349 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	CCDC126	Q96EE4	140 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PAIP2	Q9BPZ3	127 aa	Known RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SLC12A9	Q9BXP2	914 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	ZMYND15	Q9H091	742 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	CAAP1	Q9H8G2	361 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	CNOT10	Q9H9A5	744 aa	Known RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	RDH14	Q9HBH5	336 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	DNAAF2	Q9NVR5	837 aa	Known RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	WWOX	Q9NZC7	414 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	NCKIPSD	Q9NZQ3	722 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SCHIP1	Q9P0W5	487 aa	Predicted RBP	11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	SPATA7	Q9P0W8	599 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	CPNE7	Q9UBL6	633 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	LNPEP	Q9UIQ6	1025 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	ADAMTS6	Q9UKP5	1117 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PDE10A	Q9Y233	779 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PLLP	Q9Y342	182 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	PCDHGB2	Q9Y5G2	931 aa		11.58	□□□□□ -0.56
DDB1-223	ENST00000543658	GFY	I3L273	518 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	UBXN8	O00124	270 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	TYROBP	O43914	113 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	PLIN3	O60664	434 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	EML2	O95834	649 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	PROC	P04070	461 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	XRCC1	P18887	633 aa	Predicted RBP	11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	HSD17B2	P37059	387 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	SLC19A1	P41440	591 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	GRK6	P43250	576 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	DUSP3	P51452	185 aa	Predicted RBP	11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	MAZ	P56270	477 aa	Known RBP	11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	CDKL1	Q00532	357 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	TSTA3	Q13630	321 aa	Predicted RBP	11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	NR0B2	Q15466	257 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	TGFBI	Q15582	683 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	PHKG1	Q16816	387 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	CDHR3	Q6ZTQ4	885 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	SLC22A9	Q8IVM8	553 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	SYTL1	Q8IYJ3	562 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	SLC25A45	Q8N413	288 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	EID2	Q8N6I1	236 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	KY	Q8NBH2	561 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	FBXO15	Q8NCQ5	510 aa	Predicted RBP	11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	OR6C4	Q8NGE1	309 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	PPP1R14C	Q8TAE6	165 aa		11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	SETD7	Q8WTS6	366 aa	Known RBP	11.57	□□□□□ -0.56
DDB1-223	ENST00000543658	ZFPM2	Q8WW38	1151 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms