RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PPM1HQ9ULR3 514 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 C15orf41Q9Y2V0 281 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 A0A1B0GW55 424 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 FAM72CH0Y354 149 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 XKRYO14609 159 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DUX4L2P0CJ85 424 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DUX4L3P0CJ86 424 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DUX4L4P0CJ87 422 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DUX4L5P0CJ88 424 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DUX4L6P0CJ89 424 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DUX4L7P0CJ90 424 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 CD247P20963 164 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 IDH3AP50213 366 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 FAM174BQ3ZCQ3 159 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 ARMC4Q5T2S8 1044 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 FAM72AQ5TYM5 149 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 FAM72DQ6L9T8 149 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 JAZF1Q86VZ6 243 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 FAM72BQ86X60 149 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 Q8N9G6 341 aaPredicted RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 RASSF5Q8WWW0 418 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 RETREG1Q9H6L5 497 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 PNO1Q9NRX1 252 aaKnown RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 DUX4Q9UBX2 424 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 SLC22A14Q9Y267 594 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 NDUFS4O43181 175 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 AHSGP02765 367 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 FOSL2P15408 326 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 NCBP2P52298 156 aaKnown RBP eCLIP13.83□□□□□ -0.21e-6■■■■□ 23.8
USP3-204ENST00000540797 PITX1P78337 314 aaPredicted RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 DGUOKQ16854 277 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 LENG8Q96PV6 779 aaPredicted RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 SH3GL2Q99962 352 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DCUN1D5Q9BTE7 237 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 ERI3O43414 337 aaKnown RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 FABP3P05413 133 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 PROZP22891 400 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 CCKBRP32239 447 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 MPIP34949 423 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 VIPR2P41587 438 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 ZNF57Q68EA5 555 aaPredicted RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 AAGABQ6PD74 315 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DPY19L3Q6ZPD9 716 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 PIM3Q86V86 326 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 KBTBD6Q86V97 674 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 GPR151Q8TDV0 419 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 RAB7BQ96AH8 199 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 NDC1Q9BTX1 674 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 MUC13Q9H3R2 512 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 ELL3Q9HB65 397 aaPredicted RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 VPS29Q9UBQ0 182 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 CA14Q9ULX7 337 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 CLCA3PQ9Y6N3 262 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 A0A1W2PP55 124 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 FAM159BA6NKW6 160 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 CXorf49A8MYA2 514 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 ZNF487B1APH4 448 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 TIPRLO75663 272 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 PAK4O96013 591 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 EPOP01588 193 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 TCEA1P23193 301 aaKnown RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 ADSLP30566 484 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 KHKP50053 298 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 RPS21P63220 83 aaKnown RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 BROXQ5VW32 411 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 KCT2Q8NC54 265 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 EEF1AKMT1Q8WVE0 214 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 NCSTNQ92542 709 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 ADAP2Q9NPF8 381 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 ZDHHC18Q9NUE0 388 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 SNX7Q9UNH6 387 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 SIX3O95343 332 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 GIMD1P0DJR0 217 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 CSTF2P33240 577 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP3-204ENST00000540797 RUNX3Q13761 415 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 PRKD1Q15139 912 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 THOC6Q86W42 341 aaKnown RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 ZC3HC1Q86WB0 502 aaKnown RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 PGAM4Q8N0Y7 254 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 LRIG1Q96JA1 1093 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 FAM83CQ9BQN1 747 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 NLE1Q9NVX2 485 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 PCDHB11Q9Y5F2 797 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 DGKBQ9Y6T7 804 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 LAMB4A4D0S4 1761 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 C5P01031 1676 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 DCLK1O15075 740 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 GSRP00390 522 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 STC1P52823 247 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 RSBN1Q5VWQ0 802 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 RANBP3LQ86VV4 465 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 HPS6Q86YV9 775 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 OR2T34Q8NGX1 318 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 OR2T3Q8NH03 318 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 SLC13A3Q8WWT9 602 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 TSGA13Q96PP4 275 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 CRISPLD1Q9H336 500 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 CYP11A1P05108 521 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 NUP62P37198 522 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms