RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	EDN1	P05305	212 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ADRB2	P07550	413 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	HMBS	P08397	361 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	KRT5	P13647	590 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	FDPS	P14324	419 aa	Known RBP	2.56	□□□□□ -2
CD44-238	ENST00000534296	MTHFR	P42898	656 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	RAB28	P51157	221 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	SUOX	P51687	545 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CXCL9	Q07325	125 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ALCAM	Q13740	583 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CBWD6	Q4V339	395 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CBWD3	Q5JTY5	395 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	C1orf141	Q5JVX7	400 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CST9LP1	Q5W188	147 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	TMEM211	Q6ICI0	200 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	FAAP20	Q6NZ36	180 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	MFSD6	Q6ZSS7	791 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ANO5	Q75V66	913 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ATG9A	Q7Z3C6	839 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CCDC186	Q7Z3E2	898 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CAMKMT	Q7Z624	323 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ADCK2	Q7Z695	626 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	AACS	Q86V21	672 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	PLD3	Q8IV08	490 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CFAP206	Q8IYR0	622 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	PAPD5	Q8NDF8	572 aa	Known RBP	2.56	□□□□□ -2
CD44-238	ENST00000534296	DDHD1	Q8NEL9	900 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	OR6J1	Q8NGC5	347 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	PTPMT1	Q8WUK0	201 aa	Predicted RBP	2.56	□□□□□ -2
CD44-238	ENST00000534296	FCAMR	Q8WWV6	532 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ATL1	Q8WXF7	558 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	TMEM190	Q8WZ59	177 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	MRPS27	Q92552	414 aa	Known RBP	2.56	□□□□□ -2
CD44-238	ENST00000534296	SLAMF9	Q96A28	289 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	SPACA9	Q96E40	222 aa	Predicted RBP	2.56	□□□□□ -2
CD44-238	ENST00000534296	RADIL	Q96JH8	1075 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	SPAG5	Q96R06	1193 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CENPO	Q9BU64	300 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ERVMER34-1	Q9H9K5	563 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	FLRT3	Q9NZU0	649 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	2.56	□□□□□ -2
CD44-238	ENST00000534296	STK36	Q9NRP7	1315 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	LOC102723996	A0A087X1L8	192 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296		A0A1W2PRB8	838 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	PLOD2	O00469	737 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	PSMA7	O14818	248 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	PAPSS1	O43252	624 aa	Predicted RBP	2.55	□□□□□ -2
CD44-238	ENST00000534296	ADAM20	O43506	726 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	ZNF883	P0CG24	379 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	PRLR	P16471	622 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	GNB3	P16520	340 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	FLT1	P17948	1338 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	TRIM21	P19474	475 aa	Known RBP	2.55	□□□□□ -2
CD44-238	ENST00000534296	CPT2	P23786	658 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	DNASE1	P24855	282 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	GABRA5	P31644	462 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	HSPA4	P34932	840 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	MAP2K2	P36507	400 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	PDX1	P52945	283 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	PSMC6	P62333	389 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	GNB1	P62873	340 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	CDK3	Q00526	305 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	RALGDS	Q12967	914 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	CAMK2D	Q13557	499 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	MELK	Q14680	651 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	RRS1	Q15050	365 aa	Known RBP	2.55	□□□□□ -2
CD44-238	ENST00000534296	ZFP69	Q49AA0	526 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	WDR81	Q562E7	1941 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	ERMARD	Q5T6L9	678 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	CLEC17A	Q6ZS10	378 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	DENND5B	Q6ZUT9	1274 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	ZNF554	Q86TJ5	538 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	CEP97	Q8IW35	865 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	SETD6	Q8TBK2	473 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	CCDC107	Q8WV48	283 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	VPS33A	Q96AX1	596 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	NXNL1	Q96CM4	212 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	GIMAP5	Q96F15	307 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	SLC47A1	Q96FL8	570 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	ART5	Q96L15	291 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	GFI1	Q99684	422 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	FERMT1	Q9BQL6	677 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	MIS12	Q9H081	205 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	WNT5B	Q9H1J7	359 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	WDR13	Q9H1Z4	485 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	ZDHHC18	Q9NUE0	388 aa		2.55	□□□□□ -2
CD44-238	ENST00000534296	C5orf60	A6NFR6	353 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	PRR32	B1ATL7	298 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	ADAMDEC1	O15204	470 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	WDR46	O15213	610 aa	Known RBP	2.54	□□□□□ -2
CD44-238	ENST00000534296	XRCC3	O43542	346 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	ZNF500	O60304	480 aa	Predicted RBP	2.54	□□□□□ -2
CD44-238	ENST00000534296	WISP2	O76076	250 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	LINGO3	P0C6S8	592 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	FAM157C	P0CG43	387 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	IL11	P20809	199 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	CCR3	P51677	355 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	CDH11	P55287	796 aa		2.54	□□□□□ -2
CD44-238	ENST00000534296	SNRPD1	P62314	119 aa	Known RBP	2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms