RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 UBXN4Q92575 508 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 PPM1MQ96MI6 270 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 LRRC1Q9BTT6 524 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 TUBB2BQ9BVA1 445 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 ASPSCR1Q9BZE9 553 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 DPH5Q9H2P9 285 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 XKR8Q9H6D3 395 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 SLC39A1Q9NY26 324 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 B3GALT1Q9Y5Z6 326 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 COMMD10Q9Y6G5 202 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 MGAQ8IWI9 3026 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 MATN2O00339 956 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 EIF3HO15372 352 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS28-216ENST00000533806 RRP8O43159 456 aaKnown RBP12.58□□□□□ -0.4
VPS28-216ENST00000533806 C1orf105O95561 183 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 CHRM3P20309 590 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 CD9P21926 228 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 CD82P27701 267 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 PRDX3P30048 256 aaKnown RBP12.58□□□□□ -0.4
VPS28-216ENST00000533806 SHMT2P34897 504 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 CARSP49589 748 aaKnown RBP12.58□□□□□ -0.4
VPS28-216ENST00000533806 PPM1FP49593 454 aaPredicted RBP12.58□□□□□ -0.4
VPS28-216ENST00000533806 SEPHS1P49903 392 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 SH3BP2P78314 561 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 CALCOCO2Q13137 446 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 ACSBG2Q5FVE4 666 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 DNTTIP2Q5QJE6 756 aaKnown RBP12.58□□□□□ -0.4
VPS28-216ENST00000533806 DCAF12Q5T6F0 453 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 ANKS6Q68DC2 871 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 CYHR1Q6ZMK1 362 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 FAM129CQ86XR2 697 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 ANKMY2Q8IV38 441 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 D2HGDHQ8N465 521 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 ZBTB2Q8N680 514 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 LINC01555Q8NAE3 123 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 FBXO36Q8NEA4 188 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 FBXO25Q8TCJ0 367 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 FAM136AQ96C01 138 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 ZPBPQ9BS86 351 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 MCMBPQ9BTE3 642 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 AARSD1Q9BTE6 412 aaKnown RBP12.58□□□□□ -0.4
VPS28-216ENST00000533806 PHACTR1Q9C0D0 580 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 ZMYND15Q9H091 742 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 APMAPQ9HDC9 416 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 C1GALT1Q9NS00 363 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 OR6C2Q9NZP2 312 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 SLC17A6Q9P2U8 582 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 DHRS7Q9Y394 339 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 UTP11Q9Y3A2 253 aaKnown RBP12.58□□□□□ -0.4
VPS28-216ENST00000533806 NFS1Q9Y697 457 aa12.58□□□□□ -0.4
VPS28-216ENST00000533806 LOC400499M0QZD8 3231 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 EFSO43281 561 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 RASSF9O75901 435 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 KRT37O76014 449 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 C1QAP02745 245 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 FGF5P12034 268 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 FOLR1P15328 257 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 PKLRP30613 574 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 CAV1Q03135 178 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 IL11RAQ14626 422 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 CCSMST1Q4G0I0 132 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 TMEM164Q5U3C3 297 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 NEK10Q6ZWH5 1172 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 CYS1Q717R9 158 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 ZFAND4Q86XD8 727 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 DCUN1D3Q8IWE4 304 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 SIDT2Q8NBJ9 832 aaKnown RBP12.57□□□□□ -0.4
VPS28-216ENST00000533806 NOA1Q8NC60 698 aaKnown RBP12.57□□□□□ -0.4
VPS28-216ENST00000533806 CD200R1Q8TD46 325 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 HNRNPLLQ8WVV9 542 aaKnown RBP12.57□□□□□ -0.4
VPS28-216ENST00000533806 KCNE4Q8WWG9 221 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 ZNF592Q92610 1267 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 TRIM44Q96DX7 344 aaPredicted RBP12.57□□□□□ -0.4
VPS28-216ENST00000533806 CFAP36Q96G28 342 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 DCBLD2Q96PD2 775 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 TEFMQ96QE5 360 aaKnown RBP12.57□□□□□ -0.4
VPS28-216ENST00000533806 OR2A14Q96R47 310 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 RAB17Q9H0T7 212 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 ZDHHC18Q9NUE0 388 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 SPHK1Q9NYA1 384 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 PILRAQ9UKJ1 303 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 RUVBL2Q9Y230 463 aaKnown RBP12.57□□□□□ -0.4
VPS28-216ENST00000533806 BTRCQ9Y297 605 aa12.57□□□□□ -0.4
VPS28-216ENST00000533806 TDRKHQ9Y2W6 561 aaKnown RBP12.57□□□□□ -0.4
VPS28-216ENST00000533806 IGSF10Q6WRI0 2623 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 PIPSLA2A3N6 862 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 SLC9B1P1A6NJY1 282 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 C2orf74A8MZ97 194 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 POLR1CO15160 346 aaPredicted RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 PRICKLE3O43900 615 aaPredicted RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 PSIP1O75475 530 aaKnown RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 ZBTB11O95625 1053 aaPredicted RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 RPN2P04844 631 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 CHRM5P08912 532 aaPredicted RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 MSL3P1P0C860 447 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 LIPCP11150 499 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 PEBP1P30086 187 aaKnown RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 RAB28P51157 221 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 PLTPP55058 493 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 CDKN2DP55273 166 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms