RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CAPN3	P20807	821 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	SSTR2	P30874	369 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	GJC1	P36383	396 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	MAGEA1	P43355	309 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	TDGF1P3	P51864	188 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	GNG11	P61952	73 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	KIF5A	Q12840	1032 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	PDK1	Q15118	436 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	NKAIN1	Q4KMZ8	207 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	VWA2	Q5GFL6	755 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	SPESP1	Q6UW49	350 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	RNF10	Q8N5U6	811 aa	Known RBP	12	□□□□□ -0.49
CAPN1-223	ENST00000533079	PLD5	Q8N7P1	536 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	LRRN4	Q8WUT4	740 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	CNDP1	Q96KN2	507 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	OLFM3	Q96PB7	478 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	RNF157	Q96PX1	679 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	CEP41	Q9BYV8	373 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	TRIM8	Q9BZR9	551 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	LHPP	Q9H008	270 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	DEF6	Q9H4E7	631 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	MVB12B	Q9H7P6	319 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	WDR54	Q9H977	334 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	GLOD4	Q9HC38	313 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	SLC6A20	Q9NP91	592 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	INTU	Q9ULD6	942 aa		12	□□□□□ -0.49
CAPN1-223	ENST00000533079	C17orf113	A0A1B0GUU1	675 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	LOC285095	A0A1B0GVY8	99 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	BTN3A3	O00478	584 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	GAPDHS	O14556	408 aa	Predicted RBP	11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	UGT1A9	O60656	530 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	PRAMEF1	O95521	474 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	ALB	P02768	609 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	RALB	P11234	206 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	UGT1A6	P19224	532 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	UGT1A1	P22309	533 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	UGT1A4	P22310	534 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	HTR1E	P28566	365 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	CASQ1	P31415	396 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	CD151	P48509	253 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	PRLHR	P49683	370 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	TESK1	Q15569	626 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	ATP13A4	Q4VNC1	1196 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	C1orf189	Q5VU69	101 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	SLC9A4	Q6AI14	798 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	ZNF324B	Q6AW86	544 aa	Predicted RBP	11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	DET1	Q7L5Y6	550 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	KIAA1328	Q86T90	577 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	AMIGO1	Q86WK6	493 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	OR52E1	Q8NGJ3	308 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	SPATA22	Q8NHS9	363 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	DLG3	Q92796	817 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	RBM41	Q96IZ5	413 aa	Known RBP	11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	NDC1	Q9BTX1	674 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	UGT1A7	Q9HAW7	530 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	UGT1A10	Q9HAW8	530 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	UGT1A8	Q9HAW9	530 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	ACTR10	Q9NZ32	417 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	FAM153A	Q9UHL3	310 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	NXT1	Q9UKK6	140 aa	Known RBP	11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	NENF	Q9UMX5	172 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	CDYL	Q9Y232	598 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	HEY1	Q9Y5J3	304 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	POLQ	O75417	2590 aa		11.99	□□□□□ -0.49
CAPN1-223	ENST00000533079	PIKFYVE	Q9Y2I7	2098 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	CNOT3	O75175	753 aa	Known RBP	11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	PMPCB	O75439	489 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	PROSC	O94903	275 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	PIM1	P11309	404 aa	Predicted RBP	11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	PVR	P15151	417 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	ZFX	P17010	805 aa	Predicted RBP	11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	AGA	P20933	346 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	GABRA4	P48169	554 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	MFAP5	Q13361	173 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	PRKD1	Q15139	912 aa	Predicted RBP	11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	TUBB8	Q3ZCM7	444 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	TEX44	Q53QW1	395 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	SIRPB2	Q5JXA9	342 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	XKRX	Q6PP77	449 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	ISLR2	Q6UXK2	745 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	MRGPRG	Q86SM5	289 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	ADGRF3	Q8IZF5	1079 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	HEXDC	Q8WVB3	486 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	NR4A3	Q92570	626 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	CCDC120	Q96HB5	630 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	FERD3L	Q96RJ6	166 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	SLC26A1	Q9H2B4	701 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	VPS37B	Q9H9H4	285 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	LZTFL1	Q9NQ48	299 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	DHCR7	Q9UBM7	475 aa	Known RBP	11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	FAM8A1	Q9UBU6	413 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	CDC23	Q9UJX2	597 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079	ITGB1BP2	Q9UKP3	347 aa		11.98	□□□□□ -0.49
CAPN1-223	ENST00000533079		A0A1B0GX78	115 aa		11.97	□□□□□ -0.49
CAPN1-223	ENST00000533079	CFAP99	D6REC4	459 aa		11.97	□□□□□ -0.49
CAPN1-223	ENST00000533079	SOCS6	O14544	535 aa		11.97	□□□□□ -0.49
CAPN1-223	ENST00000533079	APOL1	O14791	398 aa		11.97	□□□□□ -0.49
CAPN1-223	ENST00000533079	CTIF	O43310	598 aa	Known RBP	11.97	□□□□□ -0.49
CAPN1-223	ENST00000533079	ONECUT2	O95948	504 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms