RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SHMT2P34897 504 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 CLCN7P51798 805 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 CBX1P83916 185 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 MC2RQ01718 297 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 PRKG2Q13237 762 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 CACHD1Q5VU97 1274 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 CNSTQ6PJW8 725 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 KMT5CQ86Y97 462 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 ZBED8Q8IZ13 594 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 ART4Q93070 314 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 SLC41A2Q96JW4 573 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 DCBLD2Q96PD2 775 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 TEFMQ96QE5 360 aaKnown RBP14.6□□□□□ -0.07
CPSF1-208ENST00000532560 SLC39A1Q9NY26 324 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 FOXJ2Q9P0K8 574 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.6□□□□□ -0.07
CPSF1-208ENST00000532560 V9GYY5 206 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-208ENST00000532560 ANKRD11Q6UB99 2663 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 IGHV5-51A0A0C4DH38 117 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 CCDC151A5D8V7 595 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 BTN3A3O00478 584 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 BTN3A1O00481 513 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 HAUS5O94927 633 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 NELFEP18615 380 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 POLR2CP19387 275 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 CARSP49589 748 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 KPNA2P52292 529 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 ABRQ12979 859 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 TTLL9Q3SXZ7 439 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 TRMT10BQ6PF06 316 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 ANKMY2Q8IV38 441 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 ADGRF3Q8IZF5 1079 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 MMGT1Q8N4V1 131 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 GIMAP7Q8NHV1 300 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 HNRNPLLQ8WVV9 542 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 KCNE4Q8WWG9 221 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 SEC14L1Q92503 715 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 PMEPA1Q969W9 287 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 FAM136AQ96C01 138 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 MAP3K3Q99759 626 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 AARSD1Q9BTE6 412 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 ASPSCR1Q9BZE9 553 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 TWSG1Q9GZX9 223 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 XKR8Q9H6D3 395 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 PPANQ9NQ55 473 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 FBXO8Q9NRD0 319 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 OR6C2Q9NZP2 312 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 GALPQ9UBC7 116 aa14.59□□□□□ -0.07
CPSF1-208ENST00000532560 TDRKHQ9Y2W6 561 aaKnown RBP14.59□□□□□ -0.07
CPSF1-208ENST00000532560 GSAPA4D1B5 854 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 C2orf74A8MZ97 194 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.58□□□□□ -0.08
CPSF1-208ENST00000532560 ERLIN1O75477 346 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 MATN4O95460 622 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 TPBGLP0DKB5 382 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 MCM3P25205 808 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 GABRB3P28472 473 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 PKLRP30613 574 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 SEPHS1P49903 392 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 DMTNQ08495 405 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 MGAT5Q09328 741 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 KYNUQ16719 465 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 DCAF12Q5T6F0 453 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 TEDDM1Q5T9Z0 273 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 ZDHHC24Q6UX98 284 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 CEACAM20Q6UY09 585 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 LRRC69Q6ZNQ3 347 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 NEK10Q6ZWH5 1172 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 SPACA3Q8IXA5 215 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 CFAP61Q8NHU2 1237 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 FBXO25Q8TCJ0 367 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 SKA2Q8WVK7 121 aaPredicted RBP14.58□□□□□ -0.08
CPSF1-208ENST00000532560 FOPNLQ96NB1 174 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 NRTNQ99748 197 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 ZPBPQ9BS86 351 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 LRRC1Q9BTT6 524 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 MENTQ9BUN1 341 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 PITPNM3Q9BZ71 974 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 DPH1Q9BZG8 443 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 CORO1CQ9ULV4 474 aaPredicted RBP14.58□□□□□ -0.08
CPSF1-208ENST00000532560 BTRCQ9Y297 605 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 PCDHB11Q9Y5F2 797 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 B3GALT1Q9Y5Z6 326 aa14.58□□□□□ -0.08
CPSF1-208ENST00000532560 CTAGE15A4D2H0 777 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 EIF3FO00303 357 aaPredicted RBP14.57□□□□□ -0.08
CPSF1-208ENST00000532560 VPS26AO75436 327 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 C1orf105O95561 183 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 ZBTB11O95625 1053 aaPredicted RBP14.57□□□□□ -0.08
CPSF1-208ENST00000532560 CHRM5P08912 532 aaPredicted RBP14.57□□□□□ -0.08
CPSF1-208ENST00000532560 CTAGE8P0CG41 777 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 ENO3P13929 434 aaPredicted RBP14.57□□□□□ -0.08
CPSF1-208ENST00000532560 CCNFP41002 786 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 ABCG1P45844 678 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 RAB28P51157 221 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 PLTPP55058 493 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 SH3BP2P78314 561 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 SLC7A5Q01650 507 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 TLE3Q04726 772 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 GRB7Q14451 532 aa14.57□□□□□ -0.08
CPSF1-208ENST00000532560 ACSBG2Q5FVE4 666 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms