RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	BAAT	Q14032	418 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-223	ENST00000526553	MDH1B	Q5I0G3	518 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	CORO6	Q6QEF8	472 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	VSIG1	Q86XK7	387 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	CEP57	Q86XR8	500 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	POGLUT1	Q8NBL1	392 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	OR1J1	Q8NGS3	322 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	PTPMT1	Q8WUK0	201 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-223	ENST00000526553	EDEM3	Q9BZQ6	932 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	ARRDC1-AS1	Q9H2J1	176 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	DPAGT1	Q9H3H5	408 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	FLRT3	Q9NZU0	649 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	PTRH2	Q9Y3E5	179 aa	Known RBP	4.22	□□□□□ -1.73
CD44-223	ENST00000526553	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
CD44-223	ENST00000526553	MAGED1	Q9Y5V3	778 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-223	ENST00000526553	STK36	Q9NRP7	1315 aa		4.21	□□□□□ -1.73
CD44-223	ENST00000526553	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	LOC102723996	A0A087X1L8	192 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	IGLV9-49	A0A0B4J1Y8	123 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	IGHV4-61	A0A0C4DH41	118 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	TSPY2	A6NKD2	308 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	SLCO1B7	G3V0H7	640 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	ADAMDEC1	O15204	470 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	ADAM20	O43506	726 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	MED24	O75448	989 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	IGHV4-59	P01825	116 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	HSP90AB1	P08238	724 aa	Known RBP	4.21	□□□□□ -1.74
CD44-223	ENST00000526553	QDPR	P09417	244 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	TSPY3	P0CV98	308 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	TSPY8	P0CW00	308 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	CEACAM1	P13688	526 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	SLC6A6	P31641	620 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	CEACAM8	P31997	349 aa	Predicted RBP	4.21	□□□□□ -1.74
CD44-223	ENST00000526553	MAP2K2	P36507	400 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	LIG4	P49917	911 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	TSPY1	Q01534	308 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	C14orf177	Q52M58	125 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	FIGLA	Q6QHK4	219 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	ADIPOR2	Q86V24	386 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	AFAP1	Q8N556	730 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	OR2AJ1	Q8NGZ0	328 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	GRHL3	Q8TE85	626 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	RNF128	Q8TEB7	428 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	TMEM143	Q96AN5	459 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	GIMAP5	Q96F15	307 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	BTBD10	Q9BSF8	475 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	LMF2	Q9BU23	707 aa	Known RBP	4.21	□□□□□ -1.74
CD44-223	ENST00000526553	PPIE	Q9UNP9	301 aa	Known RBP	4.21	□□□□□ -1.74
CD44-223	ENST00000526553	DISP3	Q9P2K9	1392 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	SNED1	Q8TER0	1413 aa		4.21	□□□□□ -1.74
CD44-223	ENST00000526553	GPR75-ASB3	A0A0A6YYF3	556 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	DNM1L	O00429	736 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	ATP6V0E1	O15342	81 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	PIGN	O95427	931 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	EDN1	P05305	212 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	SCG2	P13521	617 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	GJA1	P17302	382 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	EFNA1	P20827	205 aa	Predicted RBP	4.2	□□□□□ -1.74
CD44-223	ENST00000526553	WNT5A	P41221	380 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	CAPZA2	P47755	286 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	KRT83	P78385	493 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	CX3CL1	P78423	397 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	GPR17	Q13304	367 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	GRAP	Q13588	217 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	GTDC1	Q4AE62	458 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	C9orf152	Q5JTZ5	239 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	C1orf141	Q5JVX7	400 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	HECTD3	Q5T447	861 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	ZC2HC1B	Q5TFG8	222 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	KRT80	Q6KB66	452 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	FBXL22	Q6P050	247 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	ZNF790	Q6PG37	636 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	GUF1	Q8N442	669 aa	Known RBP	4.2	□□□□□ -1.74
CD44-223	ENST00000526553	DNAJC22	Q8N4W6	341 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	ZNF383	Q8NA42	475 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	MCU	Q8NE86	351 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	DDHD1	Q8NEL9	900 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	APPL2	Q8NEU8	664 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	HCAR2	Q8TDS4	363 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	NSL1	Q96IY1	281 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	GCNA	Q96QF7	691 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	CDRT15	Q96T59	188 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	TRAF4	Q9BUZ4	470 aa	Predicted RBP	4.2	□□□□□ -1.74
CD44-223	ENST00000526553	GFRA4	Q9GZZ7	299 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	ZWILCH	Q9H900	591 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	ZNF71	Q9NQZ8	489 aa	Predicted RBP	4.2	□□□□□ -1.74
CD44-223	ENST00000526553	INTS10	Q9NVR2	710 aa	Known RBP	4.2	□□□□□ -1.74
CD44-223	ENST00000526553	OSER1	Q9NX31	292 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553	CCL27	Q9Y4X3	112 aa		4.2	□□□□□ -1.74
CD44-223	ENST00000526553		A0A087X002	238 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553	hCG_1809904	A0A1W2PP81	198 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553		A0A1W2PPE2	198 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553		A0A1W2PR64	198 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553	HYKK	A2RU49	373 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553		A8MXE2	369 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553	GAPDHS	O14556	408 aa	Predicted RBP	4.19	□□□□□ -1.74
CD44-223	ENST00000526553	XRCC3	O43542	346 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553	OR10H2	O60403	315 aa		4.19	□□□□□ -1.74
CD44-223	ENST00000526553	RNASEH1	O60930	286 aa	Known RBP	4.19	□□□□□ -1.74
CD44-223	ENST00000526553	TBX10	O75333	385 aa		4.19	□□□□□ -1.74

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