RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 ABCA7Q8IZY2 2146 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 SPAG17Q6Q759 2223 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ATXN2Q99700 1313 aaKnown RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 A6NCN8 305 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 TMEM114B3SHH9 223 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 NPHS1O60500 1241 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 SNUPNO95149 360 aaKnown RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 RPS17P08708 135 aaKnown RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HIST1H2AGP0C0S8 130 aaPredicted RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HIST1H2ADP20671 130 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 MAP4P27816 1152 aaKnown RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ACTR1BP42025 376 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HALP42357 657 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 RPIAP49247 311 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HNMTP50135 292 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ACTR1AP61163 376 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HERVK_113P63132 956 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ABRQ12979 859 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 PFKFB4Q16877 469 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 UAP1L1Q3KQV9 507 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ZNF678Q5SXM1 525 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 TTC23LQ6PF05 361 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ABRAXAS1Q6UWZ7 409 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 LAYNQ6UX15 382 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 RD3Q7Z3Z2 195 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 NRROSQ86YC3 692 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 SYT12Q8IV01 421 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 TBC1D21Q8IYX1 336 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 SDR16C5Q8N3Y7 309 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 TFGQ92734 400 aaPredicted RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 RHBDF1Q96CC6 855 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 PHF21BQ96EK2 531 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 POM121Q96HA1 1249 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HIST1H2AHQ96KK5 128 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 TMEM237Q96Q45 408 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HIST1H2AJQ99878 128 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 H2AFJQ9BTM1 129 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 TRMOQ9BU70 441 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 LRRC61Q9BV99 259 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 GATA5Q9BWX5 397 aaPredicted RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ERVK-6Q9BXR3 956 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ERVMER34-1Q9H9K5 563 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 DNAJC28Q9NX36 388 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ARL15Q9NXU5 204 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 PTBP2Q9UKA9 531 aaKnown RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ASF1AQ9Y294 204 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 PLEKHM1Q9Y4G2 1056 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 TNPO3Q9Y5L0 923 aaKnown RBP12.73□□□□□ -0.37
CPNE3-205ENST00000522240 ST14Q9Y5Y6 855 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 HEBP2Q9Y5Z4 205 aa12.73□□□□□ -0.37
CPNE3-205ENST00000522240 FANCMQ8IYD8 2048 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 PDZK1P1A8MUH7 402 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 MYO1CO00159 1063 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 SNNO75324 88 aaPredicted RBP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 CTSEP14091 401 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 SLC2A4P14672 509 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 JUNDP17535 347 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 IMPDH1P20839 514 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 AK4P27144 223 aaPredicted RBP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 NDUFS1P28331 727 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 CTSKP43235 329 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 BDKRB1P46663 353 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 HNRNPKP61978 463 aaKnown RBP eCLIP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 BST1Q10588 318 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 STX3Q13277 289 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 RCN2Q14257 317 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 PCBP2Q15366 365 aaKnown RBP eCLIP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 TTC19Q6DKK2 380 aaPredicted RBP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 ASCL5Q7RTU5 278 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 KLHDC8AQ8IYD2 350 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 OR5K2Q8NHB8 316 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 CFAP61Q8NHU2 1237 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 ATL1Q8WXF7 558 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 FBXL8Q96CD0 374 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 CCDC138Q96M89 665 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 C12orf66Q96MD2 445 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 ZNF317Q96PQ6 595 aaPredicted RBP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 EGFL8Q99944 293 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 TRIT1Q9H3H1 467 aaKnown RBP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 TCEAL2Q9H3H9 227 aaPredicted RBP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 UTP6Q9NYH9 597 aaKnown RBP12.72□□□□□ -0.37
CPNE3-205ENST00000522240 WWOXQ9NZC7 414 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 SPATA7Q9P0W8 599 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 TBC1D29Q9UFV1 150 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 KLF15Q9UIH9 416 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 PSMD13Q9UNM6 376 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 DCHS1Q96JQ0 3298 aa12.72□□□□□ -0.37
CPNE3-205ENST00000522240 NCF1BA6NI72 391 aaPredicted RBP12.71□□□□□ -0.37
CPNE3-205ENST00000522240 OR5K4A6NMS3 321 aa12.71□□□□□ -0.37
CPNE3-205ENST00000522240 NCF1CA8MVU1 366 aaPredicted RBP12.71□□□□□ -0.37
CPNE3-205ENST00000522240 TCP11X1B4DZS4 312 aa12.71□□□□□ -0.37
CPNE3-205ENST00000522240 ARHGAP33O14559 1287 aa12.71□□□□□ -0.37
CPNE3-205ENST00000522240 SCAMP1O15126 338 aa12.71□□□□□ -0.37
CPNE3-205ENST00000522240 GUCA1CO95843 209 aa12.71□□□□□ -0.37
CPNE3-205ENST00000522240 MTHFD1P11586 935 aaKnown RBP12.71□□□□□ -0.37
CPNE3-205ENST00000522240 F3P13726 295 aa12.71□□□□□ -0.37
CPNE3-205ENST00000522240 NCF1P14598 390 aaPredicted RBP12.71□□□□□ -0.37
CPNE3-205ENST00000522240 RPL10P27635 214 aaKnown RBP12.71□□□□□ -0.37
CPNE3-205ENST00000522240 EEF1DP29692 281 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms