RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 KLHL8Q9P2G9 620 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 TBC1D29Q9UFV1 150 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PISDQ9UG56 409 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 AMFRQ9UKV5 643 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 TFR2Q9UP52 801 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 AAR2Q9Y312 384 aaKnown RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 SPO11Q9Y5K1 396 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 PCYT1BQ9Y5K3 369 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 DNMT3AQ9Y6K1 912 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-207ENST00000507401 RPS6KL1Q9Y6S9 549 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 MGAQ8IWI9 3026 aa7.88□□□□□ -1.15
SCN1A-207ENST00000507401 TRBV23OR9-2A0A075B6M9 112 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 ESYT3A0FGR9 886 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 PRR19A6NJB7 356 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 B4E171 279 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 F8W8V4 182 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 H7C0C1 242 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CDK2AP1O14519 115 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 AURKAO14965 403 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CEP104O60308 925 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CDK14O94921 469 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 EML2O95834 649 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 THRAP10827 490 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 LIPCP11150 499 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 PIM1P11309 404 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-207ENST00000507401 ACP5P13686 325 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 HGFP14210 728 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 ZNF7P17097 686 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-207ENST00000507401 RBL1P28749 1068 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CXCR5P32302 372 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CSTF2P33240 577 aaKnown RBP eCLIP7.87□□□□□ -1.15
SCN1A-207ENST00000507401 TSPAN7P41732 249 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 ATP5OP48047 213 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 MARCKSL1P49006 195 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 DR1Q01658 176 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 HHEXQ03014 270 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CFHR1Q03591 330 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 TMEM115Q12893 351 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-207ENST00000507401 NOMO1Q15155 1222 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 LLGL1Q15334 1064 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 AGAP9Q5VTM2 703 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 NKAIN2Q5VXU1 208 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 XKR5Q6UX68 686 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 RANBP10Q6VN20 620 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 PEX26Q7Z412 305 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 LRRTM4Q86VH4 590 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 DTX1Q86Y01 620 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 JAMLQ86YT9 394 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 TTC30BQ8N4P2 665 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 ACTL9Q8TC94 416 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 LRRC8CQ8TDW0 803 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 USP7Q93009 1102 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 HAUS1Q96CS2 278 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 AHCYL2Q96HN2 611 aaKnown RBP7.87□□□□□ -1.15
SCN1A-207ENST00000507401 OXNAD1Q96HP4 312 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-207ENST00000507401 LRRC37BQ96QE4 947 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 SELENOSQ9BQE4 189 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 NUDT22Q9BRQ3 303 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 DDA1Q9BW61 102 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 HEMGNQ9BXL5 484 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CPNE5Q9HCH3 593 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 ABCF3Q9NUQ8 709 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 CPNE7Q9UBL6 633 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 PCYOX1Q9UHG3 505 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 PRKAB1Q9Y478 270 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 LOC400499M0QZD8 3231 aa7.87□□□□□ -1.15
SCN1A-207ENST00000507401 KALRNO60229 2985 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 PRAMEF33A0A0G2JMD5 474 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 A6NJY4 79 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 C2orf81A6NN90 581 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 C9orf172C9J069 976 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 TOX3O15405 576 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-207ENST00000507401 EFSO43281 561 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 DUX1O43812 170 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 SNX2O60749 519 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 PRAMEF10O60809 474 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 PEX11AO75192 247 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 STK10O94804 968 aaKnown RBP7.86□□□□□ -1.15
SCN1A-207ENST00000507401 RBP3P10745 1247 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 PYGMP11217 842 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 FGF3P11487 239 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-207ENST00000507401 VCLP18206 1134 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 ITIH1P19827 911 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 LPOP22079 712 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-207ENST00000507401 IDSP22304 550 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 PTPN4P29074 926 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 SPAM1P38567 509 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 ETV5P41161 510 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 RANBP1P43487 201 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 MAPK10P53779 464 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 GEMP55040 296 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 KCNJ2P63252 427 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 UBE2IP63279 158 aaKnown RBP7.86□□□□□ -1.15
SCN1A-207ENST00000507401 PDE1BQ01064 536 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 OTUD4Q01804 1114 aaKnown RBP7.86□□□□□ -1.15
SCN1A-207ENST00000507401 C19orf57Q0VDD7 668 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 PRPSAP1Q14558 356 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 ATP13A5Q4VNC0 1218 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 LDLRAP1Q5SW96 308 aa7.86□□□□□ -1.15
SCN1A-207ENST00000507401 FAM182AQ5T1J6 154 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms