RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 COX6A1P12074 109 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 ALAS2P22557 587 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 HSF1Q00613 529 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 APBA1Q02410 837 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 PMPCAQ10713 525 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 CCDC40Q4G0X9 1142 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 FILIP1LQ4L180 1135 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 RESP18Q5W5W9 173 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 TRNP1Q6NT89 227 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 FBXO38Q6PIJ6 1188 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 PAOXQ6QHF9 649 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 KIF18BQ86Y91 864 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 SLC13A5Q86YT5 568 aaPredicted RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 ZNF547Q8IVP9 402 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 CHERPQ8IWX8 916 aaKnown RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 MDS2Q8NDY4 140 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 OR10Q1Q8NGQ4 319 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 FAM172AQ8WUF8 416 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 LCN9Q8WX39 176 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 RNF25Q96BH1 459 aaPredicted RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 CELF6Q96J87 481 aaKnown RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 C12orf66Q96MD2 445 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 CEP63Q96MT8 703 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 VPS35Q96QK1 796 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 WDR24Q96S15 920 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 UTP23Q9BRU9 249 aaKnown RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 YIPF4Q9BSR8 244 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 CNPY3Q9BT09 278 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 NUP85Q9BW27 656 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 KLHL25Q9H0H3 589 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 LRTM1Q9HBL6 345 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 NLRC4Q9NPP4 1024 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 METTL5Q9NRN9 209 aaKnown RBP7.68□□□□□ -1.18
USP54-211ENST00000474929 SLC22A11Q9NSA0 550 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 APEX2Q9UBZ4 518 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 ACSL5Q9ULC5 683 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 PLCL2Q9UPR0 1127 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 GTF3C3Q9Y5Q9 886 aa7.68□□□□□ -1.18
USP54-211ENST00000474929 HYKKA2RU49 373 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 RCCD1A6NED2 376 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 VSTM2BA6NLU5 285 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 CLCA1A8K7I4 914 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 DFFAO00273 331 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 DSCR3O14972 297 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 DNAJB6O75190 326 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 CLDN7O95471 211 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 CNOT4O95628 575 aaKnown RBP7.67□□□□□ -1.18
USP54-211ENST00000474929 ATXN8OSP0DMR3 200 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 EPXP11678 715 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 CYP11B1P15538 503 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 FPR1P21462 350 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 CES1P23141 567 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 UQCRC1P31930 480 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 ZNF135P52742 658 aaPredicted RBP7.67□□□□□ -1.18
USP54-211ENST00000474929 NUP107P57740 925 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 FOXL2P58012 376 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 SLC10A7Q0GE19 358 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 RABEP1Q15276 862 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 HYAL4Q2M3T9 481 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 C15orf59Q2T9L4 293 aaPredicted RBP7.67□□□□□ -1.18
USP54-211ENST00000474929 FAM173BQ6P4H8 233 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 SARM1Q6SZW1 724 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 TTLL10Q6ZVT0 673 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 SGMS2Q8NHU3 365 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 SMPDL3BQ92485 455 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 CENPIQ92674 756 aaPredicted RBP7.67□□□□□ -1.18
USP54-211ENST00000474929 MIEF2Q96C03 454 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 PPM1MQ96MI6 270 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 TUBGCP2Q9BSJ2 902 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 TUBB6Q9BUF5 446 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 SLC39A8Q9C0K1 460 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 ACP6Q9NPH0 428 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 KLHL1Q9NR64 748 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 C14orf105Q9NVL8 296 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 ZNF282Q9UDV7 671 aaPredicted RBP7.67□□□□□ -1.18
USP54-211ENST00000474929 MTRF1LQ9UGC7 380 aaKnown RBP7.67□□□□□ -1.18
USP54-211ENST00000474929 C3orf18Q9UK00 162 aa7.67□□□□□ -1.18
USP54-211ENST00000474929 IGHV1-45A0A0A0MS14 117 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 A0A1B0GTH9 108 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 TUBAL3A6NHL2 446 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 BECN2A8MW95 431 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 SYT5O00445 386 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 PRPF4O43172 522 aaKnown RBP eCLIP7.66□□□□□ -1.181e-7■■■■□ 24.9
USP54-211ENST00000474929 DAPK3O43293 454 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 TACR1P25103 407 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 ME1P48163 572 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 ASCL1P50553 236 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 CDH6P55285 790 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 SORDQ00796 357 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 KLC1Q07866 573 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 GRM7Q14831 915 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 OR1C1Q15619 314 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 MEP1AQ16819 746 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 CCDC14Q49A88 953 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 COBLL1Q53SF7 1204 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 TCTE1Q5JU00 501 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 KAZNQ674X7 775 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 PRMT9Q6P2P2 845 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 SPESP1Q6UW49 350 aa7.66□□□□□ -1.18
USP54-211ENST00000474929 UNC5DQ6UXZ4 953 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms