RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 BCKDHAP12694 445 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 ELK4P28324 431 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 NSG1P42857 185 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 CLCN2P51788 898 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 GRAMD4Q6IC98 578 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 TBC1D21Q8IYX1 336 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 OR2T12Q8NG77 320 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 TMBIM1Q969X1 311 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 HIC2Q96JB3 615 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 MUS81Q96NY9 551 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 INPP5KQ9BT40 448 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 SMPD3Q9NY59 655 aaPredicted RBP18.66■□□□□ 0.58
VIM-203ENST00000469543 B4GALT6Q9UBX8 382 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 PCDHB3Q9Y5E6 796 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 TMEM202A6NGA9 273 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 NOBOXO60393 691 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 FOXD2O60548 495 aaPredicted RBP18.66■□□□□ 0.58
VIM-203ENST00000469543 C8AP07357 584 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 PRKACGP22612 351 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 MYF6P23409 242 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 AASDHQ4L235 1098 aaPredicted RBP18.66■□□□□ 0.58
VIM-203ENST00000469543 NEK5Q6P3R8 708 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 CNKSR3Q6P9H4 555 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 TPRG1Q6ZUI0 275 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 UBE2R2Q712K3 238 aaPredicted RBP18.66■□□□□ 0.58
VIM-203ENST00000469543 SGCDQ92629 289 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 PPP3R2Q96LZ3 170 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 BBS2Q9BXC9 721 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 SMURF2Q9HAU4 748 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 LIMD1Q9UGP4 676 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 EBF1Q9UH73 591 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 EIF3LQ9Y262 564 aaKnown RBP18.66■□□□□ 0.58
VIM-203ENST00000469543 PCDHB14Q9Y5E9 798 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 U3KQV3 271 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 SCN8AQ9UQD0 1980 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 OBSL1O75147 1896 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 OR2AG2A6NM03 316 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 ARNTLO00327 626 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 LRG1P02750 347 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 CCL5P13501 91 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 PTCHD3Q3KNS1 767 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 STK32CQ86UX6 486 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 LILRA3Q8N6C8 439 aaPredicted RBP18.65■□□□□ 0.58
VIM-203ENST00000469543 PAPD5Q8NDF8 572 aaKnown RBP18.65■□□□□ 0.58
VIM-203ENST00000469543 BPIFB1Q8TDL5 484 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 HERC2P3Q9BVR0 1158 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 RC3H2Q9HBD1 1191 aaKnown RBP18.65■□□□□ 0.58
VIM-203ENST00000469543 PTTG2Q9NZH5 202 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 ADGRE2Q9UHX3 823 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 TMCO1Q9UM00 188 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 CDC14AQ9UNH5 594 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 SLC8A2Q9UPR5 921 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 AGAP14A8MT82 685 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 SOCS5O75159 536 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 LATS1O95835 1130 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 C1SP09871 688 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 CDKN2CP42773 168 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 ALDH3B2P48448 385 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 NAA20P61599 178 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 SNRPD1P62314 119 aaKnown RBP18.65■□□□□ 0.58
VIM-203ENST00000469543 C22orf39Q6P5X5 142 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 DHRSXQ8N5I4 330 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 ERLEC1Q96DZ1 483 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 YME1L1Q96TA2 773 aa18.65■□□□□ 0.58
VIM-203ENST00000469543 LILRB3O75022 631 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 FGF18O76093 207 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 CLDN9O95484 217 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 GGT1P19440 569 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 EFNA1P20827 205 aaPredicted RBP18.64■□□□□ 0.57
VIM-203ENST00000469543 MTHFRP42898 656 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 FXNQ16595 210 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 GPR33Q49SQ1 333 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 IRAK1BP1Q5VVH5 260 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 TMEM215Q68D42 235 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 CYB5D2Q8WUJ1 264 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 SELENOMQ8WWX9 145 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 HAUS8Q9BT25 410 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 NTMT1Q9BV86 223 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 CFHR5Q9BXR6 569 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 OGDHLQ9ULD0 1010 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 SPTBN5Q9NRC6 3674 aaKnown RBP18.64■□□□□ 0.57
VIM-203ENST00000469543 TRMUO75648 421 aaKnown RBP18.64■□□□□ 0.57
VIM-203ENST00000469543 WDR47O94967 919 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 GNRH1P01148 92 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 ASLP04424 464 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 ANXA5P08758 320 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 MYCLP1P12525 358 aaPredicted RBP18.64■□□□□ 0.57
VIM-203ENST00000469543 AKT1P31749 480 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 MAPK10P53779 464 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 CYP4F3Q08477 520 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 SLC14A1Q13336 389 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 USP39Q53GS9 565 aaKnown RBP18.64■□□□□ 0.57
VIM-203ENST00000469543 ADNP2Q6IQ32 1131 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 Q6ZVL8 140 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 LPCAT2Q7L5N7 544 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 TRIM46Q7Z4K8 759 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 GALNT10Q86SR1 603 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 PROSER1Q86XN7 944 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 LMNTD1Q8N9Z9 388 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 APIPQ96GX9 242 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms