RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 NFU1Q9UMS0 254 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 DHRS7Q9Y394 339 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 AKAP13Q12802 2813 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 MN1Q10571 1320 aaPredicted RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 IGHV5-51A0A0C4DH38 117 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 ESPNB1AK53 854 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 TMX2-CTNND1H3BSU7 103 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 PRAMEF10O60809 474 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 VPS26AO75436 327 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 C1QAP02745 245 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 PVRP15151 417 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 RBMS1P29558 406 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 CSTF2P33240 577 aaKnown RBP eCLIP11.31□□□□□ -0.6
CUX1-207ENST00000465461 TRA2AQ13595 282 aaKnown RBP eCLIP11.31□□□□□ -0.6
CUX1-207ENST00000465461 ZNF460Q14592 562 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 KCNAB1Q14722 419 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 TEX35Q5T0J7 233 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 ARMC6Q6NXE6 501 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 CYHR1Q6ZMK1 362 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 TRIM73Q86UV7 250 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 ZC3HC1Q86WB0 502 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 GSPT2Q8IYD1 628 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 PIP4P2Q8N4L2 257 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 GABPB2Q8TAK5 448 aaPredicted RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 EEF1AKMT1Q8WVE0 214 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 GRAMD1AQ96CP6 724 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 MRRFQ96E11 262 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 ZDHHC12Q96GR4 267 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 NAF1Q96HR8 494 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 ELMO2Q96JJ3 720 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 APMAPQ9HDC9 416 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 ASCL3Q9NQ33 180 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 NINJ2Q9NZG7 142 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 FOXJ2Q9P0K8 574 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 POLG2Q9UHN1 485 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 TRMT6Q9UJA5 497 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 ZMIZ1Q9ULJ6 1067 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 RAXQ9Y2V3 346 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 MTO1Q9Y2Z2 717 aaKnown RBP11.31□□□□□ -0.6
CUX1-207ENST00000465461 VWA7Q9Y334 891 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 PCDHGA8Q9Y5G5 932 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 COMMD10Q9Y6G5 202 aa11.31□□□□□ -0.6
CUX1-207ENST00000465461 FAM95CA0A1B0GW59 222 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 FAM159BA6NKW6 160 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 ARHGEF33A8MVX0 844 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 C9orf172C9J069 976 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 HGSO14964 777 aaPredicted RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 MATN4O95460 622 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 CHRM5P08912 532 aaPredicted RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 FDXRP22570 491 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 PRDX3P30048 256 aaKnown RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 PEBP1P30086 187 aaKnown RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 SLC5A2P31639 672 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 FOXM1Q08050 763 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 PRKAA1Q13131 559 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 COL9A2Q14055 689 aaPredicted RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 FASTKQ14296 549 aaKnown RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 TBC1D25Q3MII6 688 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 TTLL9Q3SXZ7 439 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 KBTBD12Q3ZCT8 623 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 ANKS6Q68DC2 871 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 KLHL35Q6PF15 583 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 TMEM207Q6UWW9 146 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 UNC5DQ6UXZ4 953 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 GALNT7Q86SF2 657 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 DCUN1D3Q8IWE4 304 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 CTAGE3PQ8IX95 158 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 PPM1NQ8N819 430 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 LINC01555Q8NAE3 123 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 AGBL5Q8NDL9 886 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 UHMK1Q8TAS1 419 aaKnown RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 DCBLD2Q96PD2 775 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 FMO2Q99518 471 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 MENTQ9BUN1 341 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 PHACTR1Q9C0D0 580 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 RAB33BQ9H082 229 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 CDC42EP4Q9H3Q1 356 aaKnown RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 CAB39LQ9H9S4 337 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 SLC39A1Q9NY26 324 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 TAS2R13Q9NYV9 303 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 ACTR10Q9NZ32 417 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 AKAP7Q9P0M2 348 aaPredicted RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 EPHA6Q9UF33 1036 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 MTRF1LQ9UGC7 380 aaKnown RBP11.3□□□□□ -0.6
CUX1-207ENST00000465461 ADAMTS6Q9UKP5 1117 aa11.3□□□□□ -0.6
CUX1-207ENST00000465461 PIPSLA2A3N6 862 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 SLC9B1P1A6NJY1 282 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 CDRT15L2A8MXV6 281 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 ISM1B1AKI9 464 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 PSIP1O75475 530 aaKnown RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 ACSL3O95573 720 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 SYF2O95926 243 aaKnown RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 GSTA2P09210 222 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 FAM153BP0C7A2 387 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 MPC1LP0DKB6 136 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 UGT2B7P16662 529 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 CDH3P22223 829 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 ATP5DP30049 168 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 PKLRP30613 574 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms