RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SYTL3Q4VX76 610 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 CEACAM20Q6UY09 585 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 CEP128Q6ZU80 1094 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 IFT20Q8IY31 132 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 GSDMBQ8TAX9 411 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 RHOXF2Q9BQY4 288 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 TSPYL1Q9H0U9 437 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 CCDC68Q9H2F9 335 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 CLMPQ9H6B4 373 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 FBXO8Q9NRD0 319 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 FBXO6Q9NRD1 293 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-205ENST00000465238 ZDHHC18Q9NUE0 388 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 PILRAQ9UKJ1 303 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 WDR37Q9Y2I8 494 aa17.27■□□□□ 0.36
COL7A1-205ENST00000465238 OR52A4PA6NMU1 304 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 IQCF5A8MTL0 148 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 KPNA5O15131 536 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 PKMP14618 531 aaKnown RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 SLC19A1P41440 591 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 MAGEA4P43358 317 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 MAPK9P45984 424 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 ADARP55265 1226 aaKnown RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 PLOD1Q02809 727 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 KCNC4Q03721 635 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 BOP1Q14137 746 aaKnown RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 CLCA4Q14CN2 919 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 BRD3Q15059 726 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 TMED2Q15363 201 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 RPE65Q16518 533 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 ZNF789Q5FWF6 425 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 CAPN12Q6ZSI9 719 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 PLXDC1Q8IUK5 500 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 KRT222Q8N1A0 295 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 LILRA3Q8N6C8 439 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 BIRC8Q96P09 236 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 SPRY4Q9C004 299 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 UCK1Q9HA47 277 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 PLAC1Q9HBJ0 212 aa17.26■□□□□ 0.35
COL7A1-205ENST00000465238 IMP3Q9NV31 184 aaKnown RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 GEMIN8Q9NWZ8 242 aaKnown RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 ZNF624Q9P2J8 865 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-205ENST00000465238 BSNQ9UPA5 3926 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 IFRD1O00458 451 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 WISP1O95388 367 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 APOA4P06727 396 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 GSTA2P09210 222 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 CHRM3P20309 590 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 MAP4P27816 1152 aaKnown RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 CCR7P32248 378 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 PREPP48147 710 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 UBE2IP63279 158 aaKnown RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 MPP1Q00013 466 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 MGAT5Q09328 741 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 CUL1Q13616 776 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 KRT33BQ14525 404 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 ZNF658BQ4V348 819 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 CTSL3PQ5NE16 218 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 TRMT10BQ6PF06 316 aaKnown RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 BORAQ6PGQ7 559 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 KIAA0408Q6ZU52 694 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 NLGN4XQ8N0W4 816 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 C2CD4AQ8NCU7 369 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 NLGN4YQ8NFZ3 816 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 ASZ1Q8WWH4 475 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 C9orf72Q96LT7 481 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 C12orf66Q96MD2 445 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 INSM2Q96T92 566 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-205ENST00000465238 TBC1D10AQ9BXI6 508 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 ADNPQ9H2P0 1102 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 POT1Q9NUX5 634 aa17.25■□□□□ 0.35
COL7A1-205ENST00000465238 MN1Q10571 1320 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 UBR5O95071 2799 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 SLC5A10A0PJK1 596 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 ZNF891A8MT65 544 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 HAUS5O94927 633 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 F7P08709 466 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 ANKRD34CP0C6C1 535 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 MTHFD1P11586 935 aaKnown RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 PDHA2P29803 388 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 SSTR1P30872 391 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 LEPRP48357 1165 aaKnown RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 CD151P48509 253 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 CSE1LP55060 971 aaKnown RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 HSPA14Q0VDF9 509 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 TEX35Q5T0J7 233 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 TEDDM1Q5T9Z0 273 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 CAPRIN2Q6IMN6 1127 aaKnown RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 NAPRTQ6XQN6 538 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 ATG14Q6ZNE5 492 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 C3orf62Q6ZUJ4 267 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 OTOAQ7RTW8 1153 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 CNTN4Q8IWV2 1026 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 RBM12BQ8IXT5 1001 aaKnown RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 LRRN4CLQ8ND94 238 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 SPDYE1Q8NFV5 336 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 LKAAEAR1Q8TD35 194 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 KIAA1143Q96AT1 154 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 SLC45A3Q96JT2 553 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 RMDN2Q96LZ7 410 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 CATSPER2Q96P56 530 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms