RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ABHD18Q0P651 414 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 CTBP1Q13363 440 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 THOC5Q13769 683 aaKnown RBP12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 TUBB2AQ13885 445 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 MAP7Q14244 749 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 TMED2Q15363 201 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 KYNUQ16719 465 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 MSS51Q4VC12 460 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 RNF187Q5TA31 235 aaPredicted RBP12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 IZUMO3Q5VZ72 239 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 PWWP2BQ6NUJ5 590 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 CYB5D1Q6P9G0 228 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 C6orf15Q6UXA7 325 aaPredicted RBP12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 SYDE1Q6ZW31 735 aaPredicted RBP12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 OTOAQ7RTW8 1153 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 PCGF5Q86SE9 256 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 HOOK3Q86VS8 718 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 BPHLQ86WA6 291 aaPredicted RBP12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 DENND6AQ8IWF6 608 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 ESX1Q8N693 406 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 GALNT6Q8NCL4 622 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 FAM136AQ96C01 138 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 ZNF501Q96CX3 271 aaPredicted RBP12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 STAMBPL1Q96FJ0 436 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 FCRL4Q96PJ5 515 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 TRAPPC9Q96Q05 1148 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 TUBB2BQ9BVA1 445 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 SLC12A9Q9BXP2 914 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 PITPNM3Q9BZ71 974 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 TWSG1Q9GZX9 223 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 GPN2Q9H9Y4 310 aaPredicted RBP12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 SOHLH2Q9NX45 425 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 SPHK1Q9NYA1 384 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 CIDEBQ9UHD4 219 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 LNPEPQ9UIQ6 1025 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 FAM169AQ9Y6X4 670 aa12.34□□□□□ -0.43
PRPF40A-203ENST00000448428 PCM1Q15154 2024 aa12.33□□□□□ -0.43
PRPF40A-203ENST00000448428 ZFYVE26Q68DK2 2539 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 CCDC188H7C350 402 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 ERVH48-1M5A8F1 160 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 BANF1O75531 89 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 CHRM5P08912 532 aaPredicted RBP12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 PKMP14618 531 aaKnown RBP12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 UGT2B7P16662 529 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 CHRM3P20309 590 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 STAT5AP42229 794 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 PAFAH1B1P43034 410 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 DR1Q01658 176 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 DHX9Q08211 1270 aaKnown RBP12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 GRB7Q14451 532 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 LONRF1Q17RB8 773 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 TAF1BQ53T94 588 aaPredicted RBP12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 PLEKHS1Q5SXH7 462 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 TMTC4Q5T4D3 741 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 ZNF470Q6ECI4 717 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 SPESP1Q6UW49 350 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 UNC5DQ6UXZ4 953 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 IGDCC3Q8IVU1 814 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 LMNTD1Q8N9Z9 388 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 LSM14AQ8ND56 463 aaKnown RBP12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 FLVCR1-AS1Q8TAF5 88 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 GSDMBQ8TAX9 411 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC39A7Q92504 469 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 WBP1Q96G27 269 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 RUNDC3BQ96NL0 473 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 OR2A14Q96R47 310 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 TRIM51Q9BSJ1 452 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 MENTQ9BUN1 341 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 KLHL25Q9H0H3 589 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 LATS2Q9NRM7 1088 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 C20orf96Q9NUD7 363 aaPredicted RBP12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 INTS10Q9NVR2 710 aaKnown RBP12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 OR6C2Q9NZP2 312 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 RNF14Q9UBS8 474 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 IL17BQ9UHF5 180 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 VPS9D1Q9Y2B5 631 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 NFS1Q9Y697 457 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 MGAQ8IWI9 3026 aa12.33□□□□□ -0.44
PRPF40A-203ENST00000448428 H3BMM5 538 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 TK2O00142 265 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 TTI1O43156 1089 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 KDM1AO60341 852 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 PRB1P04280 392 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 NTRK1P04629 796 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 RPN2P04844 631 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 F8A1P23610 371 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 PEBP1P30086 187 aaKnown RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 GBX1Q14549 363 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 MORF4L2Q15014 288 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 HSP90AA5PQ58FG0 334 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 TRIM73Q86UV7 250 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 DCUN1D3Q8IWE4 304 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 C2orf73Q8N5S3 287 aaPredicted RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 LINC01555Q8NAE3 123 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 OR8K5Q8NH50 307 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 SKA2Q8WVK7 121 aaPredicted RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 KIAA1143Q96AT1 154 aaPredicted RBP12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC45A3Q96JT2 553 aa12.32□□□□□ -0.44
PRPF40A-203ENST00000448428 PWWP2AQ96N64 755 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms