RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 NTNG1Q9Y2I2 539 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ZNF451Q9Y4E5 1061 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 CSAG2Q9Y5P2 127 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ANKRD12Q6UB98 2062 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 DOCK10Q96BY6 2186 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 BTN3A1O00481 513 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 CNOT3O75175 753 aaKnown RBP12.51□□□□□ -0.41
LINC00339-202ENST00000416769 HLA-DPA1P20036 260 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 OTX2P32243 289 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 GDF10P55107 478 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 PDE1BQ01064 536 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 C2orf54Q08AI8 447 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 DHX34Q14147 1143 aaKnown RBP12.51□□□□□ -0.41
LINC00339-202ENST00000416769 SLC9A5Q14940 896 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 SLC14A2Q15849 920 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 KYNUQ16719 465 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 DEFB110Q30KQ9 67 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 LDLRAP1Q5SW96 308 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 ZNF385CQ66K41 422 aaPredicted RBP12.51□□□□□ -0.41
LINC00339-202ENST00000416769 SYDE1Q6ZW31 735 aaPredicted RBP12.51□□□□□ -0.41
LINC00339-202ENST00000416769 MAMDC2Q7Z304 686 aaPredicted RBP12.51□□□□□ -0.41
LINC00339-202ENST00000416769 MAATS1Q7Z4T9 603 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 ZGRF1Q86YA3 2104 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 ZNF567Q8N184 647 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 PNPLA2Q96AD5 504 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 SPATA13Q96N96 652 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 KRT12Q99456 494 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 CD180Q99467 661 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 CARD6Q9BX69 1037 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 NLNQ9BYT8 704 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 FAM96AQ9H5X1 160 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 ACTR5Q9H9F9 607 aaPredicted RBP12.51□□□□□ -0.41
LINC00339-202ENST00000416769 GPR83Q9NYM4 423 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 PAK5Q9P286 719 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 KLHL8Q9P2G9 620 aaPredicted RBP12.51□□□□□ -0.41
LINC00339-202ENST00000416769 FAM153AQ9UHL3 310 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 NEU2Q9Y3R4 380 aa12.51□□□□□ -0.41
LINC00339-202ENST00000416769 GSAPA4D1B5 854 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 MGAT4DA6NG13 374 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 WIPF3A6NGB9 483 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 DPM1O60762 260 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 ALOX12BO75342 701 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CBX6O95503 412 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 PRAMEF1O95521 474 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 GAS8O95995 478 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 AGTP01019 485 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 IFNB1P01574 187 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 KRT14P02533 472 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 PRSS56P0CW18 603 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CBSLP0DN79 551 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 MSH3P20585 1137 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CDH3P22223 829 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CBSP35520 551 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 NCF4Q15080 339 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 SLC1A5Q15758 541 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 PARP6Q2NL67 630 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 C1orf189Q5VU69 101 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 ITPRIPL1Q6GPH6 555 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CCDC70Q6NSX1 233 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 ARMC6Q6NXE6 501 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 KLHL35Q6PF15 583 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CDHR3Q6ZTQ4 885 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 MRGPREQ86SM8 312 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CCDC89Q8N998 374 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 PHC3Q8NDX5 983 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CCDC110Q8TBZ0 833 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 BRSK1Q8TDC3 778 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CPT1BQ92523 772 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 LRFN5Q96NI6 719 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 FCRL5Q96RD9 977 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 SMAD5Q99717 465 aaKnown RBP12.5□□□□□ -0.41
LINC00339-202ENST00000416769 FAM60AQ9NP50 221 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 LATS2Q9NRM7 1088 aa12.5□□□□□ -0.41
LINC00339-202ENST00000416769 CUEDC1Q9NWM3 386 aaPredicted RBP12.5□□□□□ -0.41
LINC00339-202ENST00000416769 FAM187AA6NFU0 413 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 ZNF749O43361 778 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 KLF7O75840 302 aaPredicted RBP12.49□□□□□ -0.41
LINC00339-202ENST00000416769 KLK3P07288 261 aaPredicted RBP12.49□□□□□ -0.41
LINC00339-202ENST00000416769 RAB40ALP0C0E4 278 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 SLC35G4P0C7Q5 338 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 ETS1P14921 441 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 PDHA2P29803 388 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 RPL22P35268 128 aaKnown RBP12.49□□□□□ -0.41
LINC00339-202ENST00000416769 FDFT1P37268 417 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 PREPP48147 710 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 CDKN1CP49918 316 aaPredicted RBP12.49□□□□□ -0.41
LINC00339-202ENST00000416769 TMPRSS15P98073 1019 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 DR1Q01658 176 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 ZIC1Q15915 447 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 GLE1Q53GS7 698 aaKnown RBP12.49□□□□□ -0.41
LINC00339-202ENST00000416769 TMTC4Q5T4D3 741 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 CYB5D1Q6P9G0 228 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 ARHGEF18Q6ZSZ5 1173 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 BPHLQ86WA6 291 aaPredicted RBP12.49□□□□□ -0.41
LINC00339-202ENST00000416769 CFAP206Q8IYR0 622 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 GLIS1Q8NBF1 620 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 OR4K2Q8NGD2 314 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 OR13C4Q8NGS5 318 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 OR2L2Q8NH16 312 aa12.49□□□□□ -0.41
LINC00339-202ENST00000416769 ZNF398Q8TD17 642 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms