RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TRIT1Q9H3H1 467 aaKnown RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 ARL15Q9NXU5 204 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 CD274Q9NZQ7 290 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 ZNF624Q9P2J8 865 aaPredicted RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 POLG2Q9UHN1 485 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 CUL9Q8IWT3 2517 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 CACNA1EQ15878 2313 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 CACNA1HO95180 2353 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 FANCMQ8IYD8 2048 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 A0A1B0GTQ1 180 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 NEMP2A6NFY4 417 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 S100BP04271 92 aaPredicted RBP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 CFIP05156 583 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 ANXA5P08758 320 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 FGF3P11487 239 aaPredicted RBP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 GFAPP14136 432 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 GRK2P25098 689 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 HSD17B2P37059 387 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 GYS2P54840 703 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 NAA20P61599 178 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 HERVK_113P63132 956 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 GUCY1A3Q02108 690 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 GRIK2Q13002 908 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 GRB7Q14451 532 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 SETDB1Q15047 1291 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 PCBP2Q15366 365 aaKnown RBP eCLIP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 PFKFB4Q16877 469 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 PLA2G2CQ5R387 149 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 PRAMEF14Q5SWL7 426 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 RAB44Q7Z6P3 723 aaPredicted RBP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 C17orf82Q86X59 251 aaPredicted RBP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 KLHDC8AQ8IYD2 350 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 PTGR2Q8N8N7 351 aaPredicted RBP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 PHC3Q8NDX5 983 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 FAM46DQ8NEK8 389 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 OR5AR1Q8NGP9 310 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 OR9A1PQ8NGU1 263 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 UBTD2Q8WUN7 234 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 DYDC1Q8WWB3 177 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 ATL1Q8WXF7 558 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 MAGEB18Q96M61 343 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 PKP4Q99569 1192 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 ERVK-6Q9BXR3 956 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 UTP6Q9NYH9 597 aaKnown RBP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 NCKIPSDQ9NZQ3 722 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 TNPO3Q9Y5L0 923 aaKnown RBP13.87□□□□□ -0.19
SF3B1-204ENST00000414963 COLEC10Q9Y6Z7 277 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 KNL1Q8NG31 2342 aa13.87□□□□□ -0.19
SF3B1-204ENST00000414963 WDR91A4D1P6 747 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 PABPN1LA6NDY0 278 aaKnown RBP13.86□□□□□ -0.19
SF3B1-204ENST00000414963 OR52A4PA6NMU1 304 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 ARHGAP33O14559 1287 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 TAPBPO15533 448 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 GUCA1CO95843 209 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 SERPINE1P05121 402 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 SYPP08247 313 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 ERGP11308 486 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 MPLP40238 635 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 SLC19A1P41440 591 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 BDKRB1P46663 353 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 UBE2IP63279 158 aaKnown RBP13.86□□□□□ -0.19
SF3B1-204ENST00000414963 ARHGAP19Q14CB8 494 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 LPAL2Q16609 132 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 HLA-BQ31612 363 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 CCSMST1Q4G0I0 132 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 TRIM61Q5EBN2 209 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 KANSL1Q7Z3B3 1105 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 SLC25A45Q8N413 288 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 SFRP1Q8N474 314 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 AVL9Q8NBF6 648 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 SUMF1Q8NBK3 374 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 PRSS33Q8NF86 280 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 ZNF75CPQ92670 426 aaPredicted RBP13.86□□□□□ -0.19
SF3B1-204ENST00000414963 EXT2Q93063 718 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 PHF21BQ96EK2 531 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 CAMK1GQ96NX5 476 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 FERD3LQ96RJ6 166 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 MENTQ9BUN1 341 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 GATA5Q9BWX5 397 aaPredicted RBP13.86□□□□□ -0.19
SF3B1-204ENST00000414963 CD244Q9BZW8 370 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 KCNH6Q9H252 994 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 ARRDC1-AS1Q9H2J1 176 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 KIR3DX1Q9H7L2 352 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 MANSC1Q9H8J5 431 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 IMP3Q9NV31 184 aaKnown RBP13.86□□□□□ -0.19
SF3B1-204ENST00000414963 CFAP20Q9Y6A4 193 aaKnown RBP13.86□□□□□ -0.19
SF3B1-204ENST00000414963 SDK1Q7Z5N4 2213 aa13.86□□□□□ -0.19
SF3B1-204ENST00000414963 KDM1AO60341 852 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 SLC16A8O95907 504 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 RETP07949 1114 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 ANXA6P08133 673 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 RPS17P08708 135 aaKnown RBP13.85□□□□□ -0.19
SF3B1-204ENST00000414963 BGNP21810 368 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 EPHA8P29322 1005 aaPredicted RBP13.85□□□□□ -0.19
SF3B1-204ENST00000414963 SERPINB5P36952 375 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 SLC6A12P48065 614 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 NAGLUP54802 743 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 TCEA2Q15560 299 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 CHI3L2Q15782 390 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 CYP2A13Q16696 494 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms