RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CLCA2Q9UQC9 943 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 MCM3APO60318 1980 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 NPPAP01160 153 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 HSD17B1P14061 328 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 PRDX3P30048 256 aaKnown RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 CTNNB1P35222 781 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 CDK9P50750 372 aaKnown RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 PRKAG1P54619 331 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 OR4D2P58180 307 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 SRSF11Q05519 484 aaKnown RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 SPATS1Q496A3 300 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 CHST15Q7LFX5 561 aaPredicted RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 OTOP2Q7RTS6 562 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 DSG4Q86SJ6 1040 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 NXPE1Q8N323 547 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 GPR150Q8NGU9 434 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 BBS4Q96RK4 519 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 WRAP53Q9BUR4 548 aaKnown RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 CMTM6Q9NX76 183 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 RNF186Q9NXI6 227 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 ANGPT4Q9Y264 503 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 DRGXA6NNA5 263 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 RPN2P04844 631 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 EBLN1P0CF75 366 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 DBTP11182 482 aaKnown RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 CLCN4P51793 760 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 TLE2Q04725 743 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 GRIK2Q13002 908 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 FRG2Q64ET8 278 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 FRG2BQ96QU4 278 aa18.15■□□□□ 0.5
USP48-204ENST00000400301 PTBP2Q9UKA9 531 aaKnown RBP18.15■□□□□ 0.5
USP48-204ENST00000400301 H3BNH8 94 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 ATXN1LP0C7T5 689 aaKnown RBP18.14■□□□□ 0.5
USP48-204ENST00000400301 ITGA2P17301 1181 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 ARNTP27540 789 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 CDC42P60953 191 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 ADAM17P78536 824 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 CARD16Q5EG05 197 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 ZC3H12BQ5HYM0 836 aaKnown RBP18.14■□□□□ 0.5
USP48-204ENST00000400301 Q6ZVU0 165 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 SLCO6A1Q86UG4 719 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 CFAP206Q8IYR0 622 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 ANKFN1Q8N957 763 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 C11orf65Q8NCR3 313 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 TRPV1Q8NER1 839 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 TMEM181Q9P2C4 612 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 RAPGEFL1Q9UHV5 662 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 RUVBL1Q9Y265 456 aaKnown RBP18.14■□□□□ 0.5
USP48-204ENST00000400301 SH3GLB1Q9Y371 365 aa18.14■□□□□ 0.5
USP48-204ENST00000400301 I6L893 689 aaPredicted RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 KRT75O95678 551 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 ARSFP54793 590 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 C1DQ13901 141 aaKnown RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 IGSF21Q96ID5 467 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 SMOXQ9NWM0 555 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 DPP7Q9UHL4 492 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 CNOT11Q9UKZ1 510 aaKnown RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 MED26O95402 600 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 RGRP47804 291 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 RPS6KA3P51812 740 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 HSF5Q4G112 596 aaPredicted RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 CMTR2Q8IYT2 770 aaKnown RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 KREMEN2Q8NCW0 462 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 OR52J3Q8NH60 311 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 CXorf40AQ8TE69 158 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 OVCA2Q8WZ82 227 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 AURKBQ96GD4 344 aaPredicted RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 PRSS51A0A1B0GVH4 220 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 H0YJX3 145 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 TNFRSF10BO14763 440 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 RGS10O43665 173 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 EEDO75530 441 aaKnown RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 C1QAP02745 245 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 PGFP49763 221 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 ALDH3A2P51648 485 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 ERVPABLB-1P60509 514 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 C2orf80Q0P641 193 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 ABRAXAS2Q15018 415 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 C18orf21Q32NC0 220 aaPredicted RBP18.14■□□□□ 0.49
USP48-204ENST00000400301 LCN8Q6JVE9 175 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 TMEM220Q6QAJ8 160 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 MYDGFQ969H8 173 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 PPP1R16AQ96I34 528 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 SLC29A3Q9BZD2 475 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 SMURF2Q9HAU4 748 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 INSL5Q9Y5Q6 135 aa18.14■□□□□ 0.49
USP48-204ENST00000400301 CLIC1O00299 241 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 PER2O15055 1255 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 MATN4O95460 622 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 PRPS1L1P21108 318 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 PRKACGP22612 351 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 RFC2P35250 354 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 HMGCLP35914 325 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 USP39Q53GS9 565 aaKnown RBP18.13■□□□□ 0.49
USP48-204ENST00000400301 EIF3MQ7L2H7 374 aaKnown RBP18.13■□□□□ 0.49
USP48-204ENST00000400301 SPNS2Q8IVW8 549 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 RGL4Q8IZJ4 473 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 OR8H2Q8N162 312 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 KLHDC9Q8NEP7 349 aa18.13■□□□□ 0.49
USP48-204ENST00000400301 DNAJB8Q8NHS0 232 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms