RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MBPP02686 304 aaPredicted RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PGK2P07205 417 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ANXA8P13928 327 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SFPQP23246 707 aaKnown RBP eCLIP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 AZGP1P25311 298 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SLC8A1P32418 973 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 GMPSP49915 693 aaPredicted RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 AGTR2P50052 363 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SMSP52788 366 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 HAND2P61296 217 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SLC10A2Q12908 348 aaPredicted RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 GRIK3Q13003 919 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 DYRK1AQ13627 763 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TSTA3Q13630 321 aaPredicted RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 STK11Q15831 433 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ME3Q16798 604 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 KRT71Q3SY84 523 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 GCNT6Q5T4J0 391 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ANXA8L1Q5VT79 327 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 HIST2H2BCQ6DN03 193 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 HIST2H2BDQ6DRA6 164 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ANKRD16Q6P6B7 361 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PAPD4Q6PIY7 484 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 RANBP10Q6VN20 620 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ATG9AQ7Z3C6 839 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TTC5Q8N0Z6 440 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ADPRHL1Q8NDY3 354 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 OR56B1Q8NGI3 324 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 OR14L1PQ8NHC6 308 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 MIPOL1Q8TD10 442 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 GPT2Q8TD30 523 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SLC20A1Q8WUM9 679 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 RIT1Q92963 219 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PHF21BQ96EK2 531 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 EPSTI1Q96J88 318 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CCT7Q99832 543 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 EGLN1Q9GZT9 426 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 DDX47Q9H0S4 455 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 Q9N2J8 555 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 EQTNQ9NQ60 294 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 KLHL1Q9NR64 748 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 FAM114A2Q9NRY5 505 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 COPG2Q9UBF2 871 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 MRPS7Q9Y2R9 242 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CEP164Q9UPV0 1460 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 KIF16BQ96L93 1317 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 BRD4O60885 1362 aaPredicted RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 FANCD2Q9BXW9 1451 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 MAGEA13PA6NCF6 341 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 ANKDD1BA6NHY2 528 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 H0Y8G0 127 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 PTGESO14684 152 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 TLX2O43763 284 aaPredicted RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 PRAMEF2O60811 474 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 FCGR3BO75015 233 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 ATG13O75143 517 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 TOM1L1O75674 476 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 RHBDL1O75783 438 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 FGFR1OPO95684 399 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 TTLL1O95922 423 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 CH25HO95992 272 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 NPPAP01160 153 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 HIST1H2ABP04908 130 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 PRKCGP05129 697 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 IQCF3P0C7M6 154 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 HIST1H2ADP20671 130 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 EEF1B2P24534 225 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 CYP2F1P24903 491 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 HOXD9P28356 352 aaPredicted RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 AKT2P31751 481 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 OTX2P32243 289 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 HNRNPFP52597 415 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 HADHBP55084 474 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 MTTPP55157 894 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 CARD18P57730 90 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 SARNPP82979 210 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 FOLH1Q04609 750 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 DOC2AQ14183 400 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 NEDD9Q14511 834 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 HLXQ14774 488 aaPredicted RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 SOWAHAQ2M3V2 549 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 SLC36A3Q495N2 470 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 CD300EQ496F6 205 aaPredicted RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 TDRD12Q587J7 1177 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 FBXO48Q5FWF7 155 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 SPDYCQ5MJ68 293 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 FCRLBQ6BAA4 426 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 LRRC8EQ6NSJ5 796 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 LCTLQ6UWM7 567 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 B3GNT6Q6ZMB0 384 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 DPY19L3Q6ZPD9 716 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 HIST3H2AQ7L7L0 130 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 RTN4RL2Q86UN3 420 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 AQP12AQ8IXF9 295 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 LAS2Q8IYD9 372 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 ADGRG5Q8IZF4 528 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 ZNF321PQ8N8H1 164 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 PNPLA1Q8N8W4 532 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 AMER3Q8N944 861 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 EXD3Q8N9H8 876 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms