RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 UBAP2LQ14157 1087 aaKnown RBP10.08□□□□□ -0.8
NEDD8-202ENST00000396828 NFE2L1Q14494 772 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 SLC29A2Q14542 456 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 POU6F1Q14863 301 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 CHRNA6Q15825 494 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 CRTC2Q53ET0 693 aaPredicted RBP10.08□□□□□ -0.8
NEDD8-202ENST00000396828 SPANXN3Q5MJ09 141 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 AGAP9Q5VTM2 703 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 CLEC18BQ6UXF7 455 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 WASH2PQ6VEQ5 465 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 CAPN12Q6ZSI9 719 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 PRSS42Q7Z5A4 293 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 RASGRP3Q8IV61 690 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 IGDCC3Q8IVU1 814 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 MPP5Q8N3R9 675 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 CLEC18CQ8NCF0 446 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 GSDMBQ8TAX9 411 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 BRSK1Q8TDC3 778 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 BLOC1S5Q8TDH9 187 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 PPM1MQ96MI6 270 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 NRTNQ99748 197 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 EFHD1Q9BUP0 239 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 KIFC1Q9BW19 673 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 FUT8Q9BYC5 575 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 TRIM55Q9BYV6 548 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 TRIT1Q9H3H1 467 aaKnown RBP10.08□□□□□ -0.8
NEDD8-202ENST00000396828 MRM3Q9HC36 420 aaKnown RBP10.08□□□□□ -0.8
NEDD8-202ENST00000396828 LRRC4CQ9HCJ2 640 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 WASH6PQ9NQA3 447 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 CHRAC1Q9NRG0 131 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 ANKMY1Q9P2S6 941 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 LNPEPQ9UIQ6 1025 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 SOX13Q9UN79 622 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 TCAF1Q9Y4C2 921 aa10.08□□□□□ -0.8
NEDD8-202ENST00000396828 CFAP20Q9Y6A4 193 aaKnown RBP10.08□□□□□ -0.8
NEDD8-202ENST00000396828 SPTAN1Q13813 2472 aaKnown RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CDC14CA4D256 554 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 OR2AG2A6NM03 316 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 C2orf81A6NN90 581 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 TOX3O15405 576 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 USP1O94782 785 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 NTRK1P04629 796 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 NUDT17P0C025 328 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 EBLN1P0CF75 366 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 SSTR1P30872 391 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 RPS18P62269 152 aaKnown RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 MC1RQ01726 317 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 IL11RAQ14626 422 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CRYMQ14894 314 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 TAF1AQ15573 450 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 UAP1Q16222 522 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 RPE65Q16518 533 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 KLHL38Q2WGJ6 581 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 LACTB2Q53H82 288 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 GPRC6AQ5T6X5 926 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 FAM69BQ5VUD6 431 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 PWWP2BQ6NUJ5 590 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 DUS1LQ6P1R4 473 aaKnown RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 LRIG3Q6UXM1 1119 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 FAM151BQ6UXP7 276 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 UNC5AQ6ZN44 842 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 GLT6D1Q7Z4J2 308 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CROCCP2Q86T23 111 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 AGGF1Q8N302 714 aaeCLIP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 AVL9Q8NBF6 648 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 SLC38A9Q8NBW4 561 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 GABPB2Q8TAK5 448 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 GDAP1Q8TB36 358 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CT55Q8WUE5 264 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CDKL2Q92772 493 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 ZNF669Q96BR6 464 aaPredicted RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CXorf40BQ96DE9 158 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 PKNOX2Q96KN3 472 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 MAP3K3Q99759 626 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 TRABDQ9H4I3 376 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 PPANQ9NQ55 473 aaKnown RBP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 LHX9Q9NQ69 397 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 RAD18Q9NS91 495 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 POT1Q9NUX5 634 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.07□□□□□ -0.8
NEDD8-202ENST00000396828 IL17CQ9P0M4 197 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 SEMA5BQ9P283 1151 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 EPHA6Q9UF33 1036 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 ANAPC2Q9UJX6 822 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 TLK1Q9UKI8 766 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 KCTD3Q9Y597 815 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CRYBG3Q68DQ2 2970 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 MED13Q9UHV7 2174 aa10.07□□□□□ -0.8
NEDD8-202ENST00000396828 CENPEQ02224 2701 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 SPTBP11277 2137 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 TCRBV9S1A1TA0A576 114 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PIPSLA2A3N6 862 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 GOLGA6L10A6NI86 522 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 MAP2K7O14733 419 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 CREG1O75629 220 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PBLDP30039 288 aaPredicted RBP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 ARCN1P48444 511 aaKnown RBP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 GPX6P59796 221 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 DMPKQ09013 629 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms