RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CXorf56Q9H5V9 222 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 ACSS2Q9NR19 701 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 GEMIN8Q9NWZ8 242 aaKnown RBP17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 EIF2B4Q9UI10 523 aaKnown RBP17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 ATG2BQ96BY7 2078 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 PRR23AA6NEV1 266 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 MGAT4DA6NG13 374 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 CACNB4O00305 520 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 VPS4BO75351 444 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 MATN4O95460 622 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 ESRRBO95718 433 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 PAK4O96013 591 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 MYCLP1P12525 358 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 ZNF8P17098 575 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 NDUFV2P19404 249 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 TRIM23P36406 574 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 ATP4BP51164 291 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 CDH13P55290 713 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 KLC1Q07866 573 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 SQLEQ14534 574 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 PDCD2Q16342 344 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 NXNQ6DKJ4 435 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 GPRIN3Q6ZVF9 776 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 TRIM74Q86UV6 250 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 TRIM69Q86WT6 500 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 PELI3Q8N2H9 469 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 TP53I13Q8NBR0 393 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 PLA2G15Q8NCC3 412 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 OR2L2Q8NH16 312 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 ATP6V1E2Q96A05 226 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 RHBDF1Q96CC6 855 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 MOCOSQ96EN8 888 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 MAGEB10Q96LZ2 347 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 DPEP2Q9H4A9 486 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 SEMA4BQ9NPR2 832 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 WNT16Q9UBV4 365 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 ZFR2Q9UPR6 939 aaKnown RBP17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 POMPQ9Y244 141 aa17.78■□□□□ 0.44
CCDC88C-203ENST00000389856 K7EPI3 171 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 E2F3O00716 465 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 KMOO15229 486 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 KCNJ13O60928 360 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 STK16O75716 305 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 POP7O75817 140 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 UROSP10746 265 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 PBLDP30039 288 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 STX5Q13190 355 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 GTF2H2Q13888 395 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 INPP5AQ14642 412 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 PHKG1Q16816 387 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 GTF2H2CQ6P1K8 395 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 BNC2Q6ZN30 1099 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 SYT13Q7L8C5 426 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 LRRC70Q7Z2Q7 622 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 AMZ2Q86W34 360 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 ADHFE1Q8IWW8 467 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 CFAP206Q8IYR0 622 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 MBD1Q9UIS9 605 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 FBXL21Q9UKT6 434 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 PDE10AQ9Y233 779 aa17.77■□□□□ 0.44
CCDC88C-203ENST00000389856 LILRB5O75023 590 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 PSIP1O75475 530 aaKnown RBP17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 IL9P15248 144 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 KELP23276 732 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 OXTRP30559 389 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 GGT5P36269 586 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 AGTR2P50052 363 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 KANK2Q63ZY3 851 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 ZFP1Q6P2D0 407 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 TMEM92Q6UXU6 159 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 TMEM126BQ8IUX1 230 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 PGBD3Q8N328 593 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 FBXO15Q8NCQ5 510 aaPredicted RBP17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 CCDC138Q96M89 665 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 OSBPL6Q9BZF3 934 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC6A17Q9H1V8 727 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 FAM8A1Q9UBU6 413 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 CA14Q9ULX7 337 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 FIS1Q9Y3D6 152 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 UBFD1O14562 309 aaKnown RBP17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 RPN2P04844 631 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 HOXC4P09017 264 aaPredicted RBP17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 CHRNB1P11230 501 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 EPB42P16452 691 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 GABRG2P18507 467 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 ARL1P40616 181 aaPredicted RBP17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 NUDT2P50583 147 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 TPMTP51580 245 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 SH3BP2P78314 561 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 CCNIQ14094 377 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 IER5LQ5T953 404 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 DOK6Q6PKX4 331 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 CRTC3Q6UUV7 619 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 GOLGA7Q7Z5G4 137 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 DHDDSQ86SQ9 333 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 VRK3Q8IV63 474 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 DSELQ8IZU8 1212 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 OXR1Q8N573 874 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 HMGB4Q8WW32 186 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 FBXL8Q96CD0 374 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms