RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ACTR8Q9H981 624 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 C1orf109Q9NX04 203 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 PTTG2Q9NZH5 202 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 IL6P05231 212 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 PFKLP17858 780 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 RPL10P27635 214 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 ALDH3B2P48448 385 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 HSPA14Q0VDF9 509 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 CPSF6Q16630 551 aaKnown RBP eCLIP20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 USP39Q53GS9 565 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 TTC23LQ6PF05 361 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 B3GNT6Q6ZMB0 384 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 DET1Q7L5Y6 550 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 PARVBQ9HBI1 364 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 CD84Q9UIB8 345 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 CEPT1Q9Y6K0 416 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 DOCK6Q96HP0 2047 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 H3BSA7 217 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 KRT6AP02538 564 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 KRT6BP04259 564 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 PGRP06401 933 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 ANXA6P08133 673 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 KRT6CP48668 564 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 TUBA4AP68366 448 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 BIRC2Q13490 618 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 RBBP5Q15291 538 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 ZDHHC20Q5W0Z9 365 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 Q6ZVU0 165 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 VRK3Q8IV63 474 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 ASB11Q8WXH4 323 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 ACPTQ9BZG2 426 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 CRISPLD2Q9H0B8 497 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 NEDD8-MDP1E9PL57 170 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 TULP3O75386 442 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 ARHGEF15O94989 841 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 PDYNP01213 254 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 ACRP10323 421 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 BCKDHAP12694 445 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 RPS9P46781 194 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 CDH15P55291 814 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 TBPL2Q6SJ96 375 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 MSRB3Q8IXL7 192 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 CYGBQ8WWM9 190 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 VPS50Q96JG6 964 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 CCDC115Q96NT0 180 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 BDH2Q9BUT1 245 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 IKZF5Q9H5V7 419 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 NTN4Q9HB63 628 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 SMPD3Q9NY59 655 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC25A37Q9NYZ2 338 aa20.35■□□□□ 0.85
CCDC88B-203ENST00000359902 LAMA2P24043 3122 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 CLOCKO15516 846 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 NUAK1O60285 661 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 ADH1AP07327 375 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 C8GP07360 202 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 LINC00271P0C7V0 271 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 PABPC1P11940 636 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 DYNC1I2Q13409 638 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 KCTD21Q4G0X4 260 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 HOMEZQ8IX15 550 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 AADATQ8N5Z0 425 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 ITFG1Q8TB96 612 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 MAGEE2Q8TD90 523 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 MPP4Q96JB8 637 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 THUMPD3Q9BV44 507 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 CD320Q9NPF0 282 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 SAGE1Q9NXZ1 904 aa20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 MKI67P46013 3256 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-203ENST00000359902 ATP1B2P14415 290 aaPredicted RBP20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 NFKBIAP25963 317 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 SH3BGRP55822 239 aaPredicted RBP20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 CYP4F3Q08477 520 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 CYBRD1Q53TN4 286 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 TTC33Q6PID6 262 aaPredicted RBP20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 GDPD4Q6W3E5 623 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 LRRC70Q7Z2Q7 622 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 ZNF786Q8N393 782 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 OR2T12Q8NG77 320 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 OR10A6Q8NH74 314 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 CLHC1Q8NHS4 586 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 SKA2Q8WVK7 121 aaPredicted RBP20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 TMIGD2Q96BF3 282 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 TCEAL4Q96EI5 215 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 FBXL20Q96IG2 436 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 GORASP2Q9H8Y8 452 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 FADS3Q9Y5Q0 445 aa20.33■□□□□ 0.85
CCDC88B-203ENST00000359902 KCNE1BA0A087WTH5 132 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 AREL1O15033 823 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 CLIC3O95833 236 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 RAP2AP10114 183 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 TCAIMQ8N3R3 496 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 DHRSXQ8N5I4 330 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 KLHL23Q8NBE8 558 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 OR2A12Q8NGT7 310 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 MYLIPQ8WY64 445 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 OR52E6Q96RD3 313 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 BBS2Q9BXC9 721 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 EMILIN2Q9BXX0 1053 aa20.33■□□□□ 0.84
CCDC88B-203ENST00000359902 UPK1AO00322 258 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms