RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 STN1Q9H668 368 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 LRRC40Q9H9A6 602 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 COG4Q9H9E3 785 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ACTR5Q9H9F9 607 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 GCM1Q9NP62 436 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 SERHLQ9NQF3 203 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GKN1Q9NS71 199 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 DUS2Q9NX74 493 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 IL17CQ9P0M4 197 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ARMCX1Q9P291 453 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 NFKBIL1Q9UBC1 381 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZFP69BQ9UJL9 534 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 RPL26L1Q9UNX3 145 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 YBX2Q9Y2T7 364 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 DNAJC15Q9Y5T4 150 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 USH1CQ9Y6N9 552 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZFP37Q9Y6Q3 630 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 DSPP15924 2871 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 TRPM6Q9BX84 2022 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 TCRBV3S1A0A5B6 114 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 KRTAP9-7A8MTY7 169 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 TMEM114B3SHH9 223 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 POC1B-GALNT4F8VUJ3 575 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 FCHO1O14526 889 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 TEX28O15482 410 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 ENTPD5O75356 428 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 TM7SF2O76062 418 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 RNF8O76064 485 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 CDK14O94921 469 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 LINGO3P0C6S8 592 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 MYL2P10916 166 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 HSPA8P11142 646 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 ERGP11308 486 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 PRPH2P23942 346 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 PTPN4P29074 926 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 PRDX6P30041 224 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 HLA-FP30511 346 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 ADSLP30566 484 aaPredicted RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 GP5P40197 560 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 SLC26A3P40879 764 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 SLC1A6P48664 564 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 HNRNPFP52597 415 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 MVDP53602 400 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 ABCE1P61221 599 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 MAXP61244 160 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 RPS24P62847 133 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 RPL10AP62906 217 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 DLX2Q07687 328 aaPredicted RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 AP1B1Q10567 949 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 MALLQ13021 153 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 CALCOCO2Q13137 446 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 MAPK11Q15759 364 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 DEFB115Q30KQ5 88 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 C18orf21Q32NC0 220 aaPredicted RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 LSM12Q3MHD2 195 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 MINDY4Q4G0A6 757 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 FLYWCH1Q4VC44 716 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 HSP90AA5PQ58FG0 334 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 GPRC6AQ5T6X5 926 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 OGFRL1Q5TC84 451 aaPredicted RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 TMEM198Q66K66 360 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 NAIF1Q69YI7 327 aaPredicted RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 LAIR1Q6GTX8 287 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 CNKSR3Q6P9H4 555 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 DLEU7Q6UYE1 221 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 PPP1R21Q6ZMI0 780 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 ZNF783Q6ZMS7 281 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 FAM47EQ6ZV65 393 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 ZNF771Q7L3S4 317 aaPredicted RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 CROCCP2Q86T23 111 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 ZNF605Q86T29 641 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 VPS52Q8N1B4 723 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 OXR1Q8N573 874 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 CAMKK1Q8N5S9 505 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 PAPD5Q8NDF8 572 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 PPP1R14CQ8TAE6 165 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 RHEBL1Q8TAI7 183 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 APOBEC4Q8WW27 367 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 ERP27Q96DN0 273 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 TCEAL4Q96EI5 215 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 CFAP36Q96G28 342 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 PAWRQ96IZ0 340 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 SAMD11Q96NU1 681 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 SIGLEC11Q96RL6 698 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 BTBD10Q9BSF8 475 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 FEM1AQ9BSK4 669 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 SLC46A2Q9BY10 475 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 ZNF717Q9BY31 904 aaPredicted RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 ZYG11BQ9C0D3 744 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 THAP1Q9NVV9 213 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 UBAP1Q9NZ09 502 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 AFF4Q9UHB7 1163 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 PCTPQ9UKL6 214 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 MAFFQ9ULX9 164 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 CORO2BQ9UQ03 480 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 COPG1Q9Y678 874 aaKnown RBP2.28□□□□□ -2.05
VPS54-202ENST00000354504 CDY1Q9Y6F8 540 aa2.28□□□□□ -2.05
VPS54-202ENST00000354504 EML6Q6ZMW3 1958 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 MGAQ8IWI9 3026 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms