RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 A0A1B0GVG6 124 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 RAP2AP10114 183 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 EPORP19235 508 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 CYP4F3Q08477 520 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 FAM98BQ52LJ0 330 aaKnown RBP21.3■■□□□ 1
SHMT1-202ENST00000352886 ALDH16A1Q8IZ83 802 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 SKA2Q8WVK7 121 aaPredicted RBP21.3■■□□□ 1
SHMT1-202ENST00000352886 LMLNQ96KR4 655 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 SLC32A1Q9H598 525 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 CLMPQ9H6B4 373 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 NTN4Q9HB63 628 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 TUBA8Q9NY65 449 aaPredicted RBP21.3■■□□□ 1
SHMT1-202ENST00000352886 HS3ST2Q9Y278 367 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 LTBP2Q14767 1821 aa21.3■■□□□ 1
SHMT1-202ENST00000352886 LILRB3O75022 631 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 ASLP04424 464 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 UGT2B4P06133 528 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 HSPA14Q0VDF9 509 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 UBE2R2Q712K3 238 aaPredicted RBP21.29■■□□□ 1
SHMT1-202ENST00000352886 LPCAT2Q7L5N7 544 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 DET1Q7L5Y6 550 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 AADATQ8N5Z0 425 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 CCDC115Q96NT0 180 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 SLC29A3Q9BZD2 475 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 ACPTQ9BZG2 426 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 SLC25A37Q9NYZ2 338 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 MBD1Q9UIS9 605 aaPredicted RBP21.29■■□□□ 1
SHMT1-202ENST00000352886 LAMA3Q16787 3333 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 GSTA4O15217 222 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 KRT6AP02538 564 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 KRT6BP04259 564 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 KRT6CP48668 564 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 CHRNB3Q05901 458 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 USP39Q53GS9 565 aaKnown RBP21.29■■□□□ 1
SHMT1-202ENST00000352886 ABRAXAS1Q6UWZ7 409 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 DPY19L3Q6ZPD9 716 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 PATL1Q86TB9 770 aaKnown RBP21.29■■□□□ 1
SHMT1-202ENST00000352886 GALNT13Q8IUC8 556 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 MSRB3Q8IXL7 192 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 FAM86B1Q8N7N1 296 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 MCCC1Q96RQ3 725 aaPredicted RBP21.29■■□□□ 1
SHMT1-202ENST00000352886 SLC46A2Q9BY10 475 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 ASIC5Q9NY37 505 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 TBX21Q9UL17 535 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 PPIL1Q9Y3C6 166 aa21.29■■□□□ 1
SHMT1-202ENST00000352886 DEAF1O75398 565 aaPredicted RBP21.28■■□□□ 1
SHMT1-202ENST00000352886 PDYNP01213 254 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 OR56A5P0C7T3 313 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 BCKDHAP12694 445 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 ZNF548Q8NEK5 533 aaPredicted RBP21.28■■□□□ 1
SHMT1-202ENST00000352886 TOX2Q96NM4 488 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 OR52E6Q96RD3 313 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 GORASP2Q9H8Y8 452 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 CD84Q9UIB8 345 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 UPK1AO00322 258 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 TRMUO75648 421 aaKnown RBP21.28■■□□□ 1
SHMT1-202ENST00000352886 C1SP09871 688 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 CDK9P50750 372 aaKnown RBP21.28■■□□□ 1
SHMT1-202ENST00000352886 ZXDCQ2QGD7 858 aaPredicted RBP21.28■■□□□ 1
SHMT1-202ENST00000352886 SLC44A4Q53GD3 710 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 FBXO30Q8TB52 745 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 TMBIM1Q969X1 311 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 TBCDQ9BTW9 1192 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 CARS2Q9HA77 564 aaKnown RBP21.28■■□□□ 1
SHMT1-202ENST00000352886 KLHL42Q9P2K6 505 aa21.28■■□□□ 1
SHMT1-202ENST00000352886 ABHD14A-ACY1A0A1B0GW23 586 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 TRIM64CA6NLI5 447 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 AOAHP28039 575 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 TMEM259Q4ZIN3 620 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 CORO1BQ9BR76 489 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 BRD9Q9H8M2 597 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 TMEM39AQ9NV64 488 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 CCL26Q9Y258 94 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 ATP11BQ9Y2G3 1177 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 HELZP42694 1942 aaKnown RBP21.27■■□□□ 1
SHMT1-202ENST00000352886 IGLV3-16A0A075B6K0 115 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 TRIM64A6NGJ6 449 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 AREL1O15033 823 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 C8AP07357 584 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 ADARB1P78563 741 aaKnown RBP21.27■■□□□ 1
SHMT1-202ENST00000352886 GTDC1Q4AE62 458 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 ENPP6Q6UWR7 440 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 SELENOMQ8WWX9 145 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 CPEB1Q9BZB8 566 aaKnown RBP21.27■■□□□ 1
SHMT1-202ENST00000352886 PARVBQ9HBI1 364 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 B4GALT6Q9UBX8 382 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 ADGRE2Q9UHX3 823 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 SLCO3A1Q9UIG8 710 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 SLC25A13Q9UJS0 675 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 PCDHGA11Q9Y5H2 935 aa21.27■■□□□ 1
SHMT1-202ENST00000352886 PRSS23O95084 383 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 MTHFRP42898 656 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 SPINT3P49223 89 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 ARSFP54793 590 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 BOP1Q14137 746 aaKnown RBP21.26■□□□□ 0.99
SHMT1-202ENST00000352886 PLCL1Q15111 1095 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 CARD16Q5EG05 197 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 CDKL4Q5MAI5 379 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 ASTLQ6HA08 431 aaPredicted RBP21.26■□□□□ 0.99
SHMT1-202ENST00000352886 USP51Q70EK9 711 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms