RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZNF300Q96RE9 604 aaPredicted RBP21.94■■□□□ 1.1
TRIM28-202ENST00000341753 ASPSCR1Q9BZE9 553 aa21.94■■□□□ 1.1
TRIM28-202ENST00000341753 FBXO8Q9NRD0 319 aa21.94■■□□□ 1.1
TRIM28-202ENST00000341753 PSMD11O00231 422 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 VPS26AO75436 327 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 GUCA1CO95843 209 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 IGFBP5P24593 272 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 SERPINB1P30740 379 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 IL2P60568 153 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 TUSC3Q13454 348 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 GTF2H3Q13889 308 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 KIAA0040Q15053 153 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 CTSL3PQ5NE16 218 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 TTC9BQ8N6N2 239 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 MDGA1Q8NFP4 955 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 TRIT1Q9H3H1 467 aaKnown RBP21.93■■□□□ 1.1
TRIM28-202ENST00000341753 EHD1Q9H4M9 534 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 RASSF1Q9NS23 344 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 OR7A17O14581 309 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 CCDC159P0C7I6 412 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 MYCLP1P12525 358 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-202ENST00000341753 TCEA1P23193 301 aaKnown RBP21.93■■□□□ 1.1
TRIM28-202ENST00000341753 CFAP52Q8N1V2 620 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 MINDY2Q8NBR6 621 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 CD200R1Q8TD46 325 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 C1orf74Q96LT6 269 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 NOD1Q9Y239 953 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 CREG1O75629 220 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 PKMP14618 531 aaKnown RBP21.93■■□□□ 1.1
TRIM28-202ENST00000341753 EPHA2P29317 976 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 NR4A2P43354 598 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 ZNF140P52738 457 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-202ENST00000341753 TSPY1Q01534 308 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 PRKCZQ05513 592 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 SERINC3Q13530 473 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 LRRC8DQ7L1W4 858 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 ZNF540Q8NDQ6 660 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 DSN1Q9H410 356 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 NECTIN3Q9NQS3 549 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 NLE1Q9NVX2 485 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-202ENST00000341753 FKBPLQ9UIM3 349 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 TLR6Q9Y2C9 796 aa21.93■■□□□ 1.1
TRIM28-202ENST00000341753 LAMA3Q16787 3333 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 A0A0D9SEW6 157 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 MYO1GB0I1T2 1018 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 LCKP06239 509 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 RGRP47804 291 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 IL10RBQ08334 325 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 COLEC12Q5KU26 742 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 CEP68Q76N32 757 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 GALNT10Q86SR1 603 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 PLD3Q8IV08 490 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 SLC22A15Q8IZD6 547 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 CLIP4Q8N3C7 705 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 KLHDC9Q8NEP7 349 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 PYCR2Q96C36 320 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 SLC39A13Q96H72 371 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 SLIRPQ9GZT3 109 aaKnown RBP21.92■■□□□ 1.1
TRIM28-202ENST00000341753 ITM2CQ9NQX7 267 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 PKP3Q9Y446 797 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 TDRD15B5MCY1 1934 aaKnown RBP21.92■■□□□ 1.1
TRIM28-202ENST00000341753 M0QZQ0 153 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 TBX1O43435 398 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 ADAMTS4O75173 837 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 SERPINF2P08697 491 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 RYKP34925 604 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 PBX3P40426 434 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 CLK3P49761 638 aaKnown RBP21.92■■□□□ 1.1
TRIM28-202ENST00000341753 DSC3Q14574 896 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 ACOX1Q15067 660 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 CARD16Q5EG05 197 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 ZRANB3Q5FWF4 1079 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 CES5AQ6NT32 575 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 RGMBQ6NW40 437 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 ANKRD46Q86W74 232 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 ARMC8Q8IUR7 673 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 MICU2Q8IYU8 434 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 LGALS12Q96DT0 336 aa21.92■■□□□ 1.1
TRIM28-202ENST00000341753 A6NL46 340 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 E5RI56 91 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 MSH3P20585 1137 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 AKT1P31749 480 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 GDF5P43026 501 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 ALDH7A1P49419 539 aaKnown RBP21.91■■□□□ 1.1
TRIM28-202ENST00000341753 GBX1Q14549 363 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 ATAD3BQ5T9A4 648 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 AFTPHQ6ULP2 937 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 RAVER1Q8IY67 606 aaKnown RBP21.91■■□□□ 1.1
TRIM28-202ENST00000341753 LIX1Q8N485 282 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 EFHBQ8N7U6 833 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 ZBTB18Q99592 522 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 RMND5AQ9H871 391 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 DCAF13Q9NV06 445 aaKnown RBP21.91■■□□□ 1.1
TRIM28-202ENST00000341753 SPATA7Q9P0W8 599 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 ERVK-11Q9UQG0 969 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 COL4A4P53420 1690 aaPredicted RBP21.91■■□□□ 1.1
TRIM28-202ENST00000341753 SLC16A6O15403 523 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 ZNF623O75123 536 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 NDST3O95803 873 aa21.91■■□□□ 1.1
TRIM28-202ENST00000341753 DLGAP3O95886 979 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms