RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 PARVBQ9HBI1 364 aa14.52□□□□□ -0.08
CLCNKA-201ENST00000331433 SPHK2Q9NRA0 654 aa14.52□□□□□ -0.08
CLCNKA-201ENST00000331433 PCDHB3Q9Y5E6 796 aa14.52□□□□□ -0.08
CLCNKA-201ENST00000331433 IFRD1O00458 451 aaPredicted RBP14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 FCGR1AP12314 374 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 ATP1B2P14415 290 aaPredicted RBP14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 NTHL1P78549 312 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 MAD2L1Q13257 205 aaPredicted RBP14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 MAPKAPK3Q16644 382 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 POM121L1PQ3SYA9 428 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 ZNF648Q5T619 568 aaPredicted RBP14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 METTL2BQ6P1Q9 378 aaKnown RBP14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 PROSER1Q86XN7 944 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 MFSD2AQ8NA29 543 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 TSPAN14Q8NG11 270 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 ASB11Q8WXH4 323 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 ZNF583Q96ND8 569 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 ADI1Q9BV57 179 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 CHID1Q9BWS9 393 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 SLC12A9Q9BXP2 914 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 PNPLA3Q9NST1 481 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 WNT6Q9Y6F9 365 aa14.52□□□□□ -0.09
CLCNKA-201ENST00000331433 CXorf51AA0A1B0GTR3 108 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 TTC34A8MYJ7 566 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 VILLO15195 856 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 LEFTY1O75610 366 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 H6PDO95479 791 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 PGRP06401 933 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 RHOP08100 348 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 UMPSP11172 480 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 BCKDHAP12694 445 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 ETV3P41162 512 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 RECQLP46063 649 aaPredicted RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 PTCHD3Q3KNS1 767 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 Q6ZVL8 140 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 SPRED1Q7Z699 444 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 TBC1D21Q8IYX1 336 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 PAPD5Q8NDF8 572 aaKnown RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 SELENOMQ8WWX9 145 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 P2RY13Q9BPV8 354 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 EMILIN2Q9BXX0 1053 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 SLC29A3Q9BZD2 475 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 C1orf109Q9NX04 203 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 PKD2L2Q9NZM6 624 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 KLHL42Q9P2K6 505 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 MAGEL2Q9UJ55 1249 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 DLGAP4Q9Y2H0 992 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 NOTCH4Q99466 2003 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 KANSL1LA0AUZ9 987 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 CCDC160A6NGH7 325 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 NUAK1O60285 661 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 RASAL1O95294 804 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 CLIC3O95833 236 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 KRT6AP02538 564 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 KRT6BP04259 564 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 HIST1H2AGP0C0S8 130 aaPredicted RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 PFKLP17858 780 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 HIST1H2ADP20671 130 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 ITPKAP23677 461 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 NFKBIAP25963 317 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 KRT6CP48668 564 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 CLCN2P51788 898 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 POLR2LP62875 67 aaKnown RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 GBX1Q14549 363 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 GTDC1Q4AE62 458 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 TMTC4Q5T4D3 741 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 NEK5Q6P3R8 708 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 PRR23BQ6ZRT6 265 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 MSRB3Q8IXL7 192 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 OR10A6Q8NH74 314 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 DGCR14Q96DF8 476 aaKnown RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 RMND5BQ96G75 393 aaPredicted RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 VPS50Q96JG6 964 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 HIST1H2AHQ96KK5 128 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 HIST1H2AJQ99878 128 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 H2AFJQ9BTM1 129 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 THUMPD3Q9BV44 507 aaKnown RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 CLMPQ9H6B4 373 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 C11orf49Q9H6J7 331 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 SLC25A37Q9NYZ2 338 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 NDUFA13Q9P0J0 144 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 CXXC1Q9P0U4 656 aaPredicted RBP14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 MYRFQ9Y2G1 1151 aa14.51□□□□□ -0.09
CLCNKA-201ENST00000331433 OR2AG2A6NM03 316 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 H3BNH8 94 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 AREL1O15033 823 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 LDLRP01130 860 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 ROR2Q01974 943 aaKnown RBP14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 MERTKQ12866 999 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 USP39Q53GS9 565 aaKnown RBP14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 ARSIQ5FYB1 569 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 ZDHHC20Q5W0Z9 365 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 ELMSAN1Q6PJG2 1045 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 RNF165Q6ZSG1 346 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 ZNF366Q8N895 744 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 OR8J3Q8NGG0 315 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 ZFP28Q8NHY6 868 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 CYGBQ8WWM9 190 aa14.5□□□□□ -0.09
CLCNKA-201ENST00000331433 FIG4Q92562 907 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms