RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 HERC2P3Q9BVR0 1158 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ARHGEF3Q9NR81 526 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 RGPD1P0DJD0 1748 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 FAM221BA6H8Z2 402 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ZNF840PA6NDX5 716 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 DCLK1O15075 740 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 PDPK1O15530 556 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 SERPINA6P08185 405 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 CD72P21854 359 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 TRIQKQ629K1 86 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 SLC30A6Q6NXT4 461 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 Q6ZVL8 140 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 HEATR4Q86WZ0 1026 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 HNMTP50135 292 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 TMEM115Q12893 351 aaPredicted RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 ZNF648Q5T619 568 aaPredicted RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 CRELD2Q6UXH1 353 aaPredicted RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 PTCHD4Q6ZW05 846 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ITM2CQ9NQX7 267 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 B4GALT6Q9UBX8 382 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 FAM86C2PA6NEL3 165 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 HEXBP07686 556 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ATP5A1P25705 553 aaKnown RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 OXTRP30559 389 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 RHAGQ02094 409 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 KLHL24Q6TFL4 600 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 USP53Q70EK8 1073 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ZDHHC12Q96GR4 267 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 KHNYNO15037 678 aaKnown RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 MID1O15344 667 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 KLK1P06870 262 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ALOX5P09917 674 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 PCDH1Q08174 1060 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 TMEM25Q86YD3 366 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 PLA2G15Q8NCC3 412 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 HHIPQ96QV1 700 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 PCDH7O60245 1069 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 RGS20O76081 388 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 PER3P56645 1201 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 PTPRCAPQ14761 206 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 GPRC6AQ5T6X5 926 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 TTC27Q6P3X3 843 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 GALNT18Q6P9A2 607 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 CRISPLD1Q9H336 500 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 TRIM24O15164 1050 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 TMCC2O75069 709 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 NUP54Q7Z3B4 507 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 OAFQ86UD1 273 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 PROSER1Q86XN7 944 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 FSTL5Q8N475 847 aaPredicted RBP13.23□□□□□ -0.29
RFFL-201ENST00000315249 RPLP0P6Q8NHW5 317 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 SLC35G5Q96KT7 338 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 RBCK1Q9BYM8 510 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 KLRF1Q9NZS2 232 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 HNRNPCP07910 306 aaKnown RBP eCLIP13.23□□□□□ -0.294e-6■□□□□ 11.1
RFFL-201ENST00000315249 ETV3P41162 512 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 YAP1P46937 504 aaKnown RBP13.23□□□□□ -0.29
RFFL-201ENST00000315249 TAS1R3Q7RTX0 852 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 OR52J3Q8NH60 311 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 RNF121Q9H920 327 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 DHRS12A0PJE2 317 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 GRIA1P42261 906 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 VWA5B1Q5TIE3 1220 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 KIAA0930Q6ICG6 404 aaPredicted RBP13.23□□□□□ -0.29
RFFL-201ENST00000315249 TNFAIP8L2Q6P589 184 aaPredicted RBP13.23□□□□□ -0.29
RFFL-201ENST00000315249 DPY19L3Q6ZPD9 716 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 SPOCK2Q92563 424 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 RGS17Q9UGC6 210 aaPredicted RBP13.23□□□□□ -0.29
RFFL-201ENST00000315249 MRPS7Q9Y2R9 242 aaKnown RBP13.23□□□□□ -0.29
RFFL-201ENST00000315249 WASF2Q9Y6W5 498 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 G3V2T6 193 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 CD247P20963 164 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 SCNN1AP37088 669 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 GALNT5Q7Z7M9 940 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 PIM3Q86V86 326 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 KBTBD6Q86V97 674 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 FAM81AQ8TBF8 368 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 FAM83CQ9BQN1 747 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 SLC32A1Q9H598 525 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 EIF2B3Q9NR50 452 aaKnown RBP13.23□□□□□ -0.29
RFFL-201ENST00000315249 SAGE1Q9NXZ1 904 aa13.23□□□□□ -0.29
RFFL-201ENST00000315249 CENPXA8MT69 81 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 TRIM38O00635 465 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 GABRDO14764 452 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 PIP5K1BO14986 540 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 RFX4Q33E94 735 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 TOR1AIP1Q5JTV8 583 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 TTC9BQ8N6N2 239 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 MRPL39Q9NYK5 338 aaKnown RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 SORCS3Q9UPU3 1222 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 A6NCN8 305 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 IRF9Q00978 393 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 INCA1Q0VD86 236 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 SERINC3Q13530 473 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 STMN3Q9NZ72 180 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 GNEQ9Y223 722 aaKnown RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 RBMS1P29558 406 aaKnown RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 GPR68Q15743 365 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 AMIGO2Q86SJ2 522 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 CMASQ8NFW8 434 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms