RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 EBLN1P0CF75 366 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 PRDX3P30048 256 aaKnown RBP11.68□□□□□ -0.54
SCFD1-201ENST00000311943 CSTF2P33240 577 aaKnown RBP eCLIP11.68□□□□□ -0.546e-6■■□□□ 13.8
SCFD1-201ENST00000311943 CALCOCO2Q13137 446 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 GPR19Q15760 415 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 DEFB110Q30KQ9 67 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 CYHR1Q6ZMK1 362 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 MBOAT1Q6ZNC8 495 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 VASH2Q86V25 355 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 AMIGO1Q86WK6 493 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 TMEM151BQ8IW70 566 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 SPATA6LQ8N4H0 392 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 OR5K2Q8NHB8 316 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 KIF18AQ8NI77 898 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 WDR48Q8TAF3 677 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 DENND1AQ8TEH3 1009 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 EEF1AKMT1Q8WVE0 214 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 ASZ1Q8WWH4 475 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 AARSD1Q9BTE6 412 aaKnown RBP11.68□□□□□ -0.54
SCFD1-201ENST00000311943 STRADBQ9C0K7 418 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 CAB39LQ9H9S4 337 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 UCK1Q9HA47 277 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 SIDT1Q9NXL6 827 aaKnown RBP11.68□□□□□ -0.54
SCFD1-201ENST00000311943 MOCS1Q9NZB8 636 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 PCDHGA8Q9Y5G5 932 aa11.68□□□□□ -0.54
SCFD1-201ENST00000311943 E5RI56 91 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 C1orf105O95561 183 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 ESR1P03372 595 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 CKAP4Q07065 602 aaKnown RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 RPA4Q13156 261 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 GBX1Q14549 363 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 PAQR3Q6TCH7 311 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 TIPARPQ7Z3E1 657 aaKnown RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 PLXDC1Q8IUK5 500 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 MMGT1Q8N4V1 131 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 ZBTB2Q8N680 514 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 GPATCH11Q8N954 259 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 UHMK1Q8TAS1 419 aaKnown RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 IFT81Q8WYA0 676 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 FGF11Q92914 225 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 OR6C1Q96RD1 312 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 SYNPO2LQ9H987 977 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 CPNE5Q9HCH3 593 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 LRRC4CQ9HCJ2 640 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 ABCF3Q9NUQ8 709 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 SLC39A1Q9NY26 324 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 COLEC10Q9Y6Z7 277 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 TCRBV9S1A1TA0A576 114 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 ARHGEF33A8MVX0 844 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 KLK10O43240 276 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 ITGA2BP08514 1039 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 RHOXF2BP0C7M4 288 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 RBMS1P29558 406 aaKnown RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 GRIA3P42263 894 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 CD151P48509 253 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 ZXDCQ2QGD7 858 aaPredicted RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 DNTTIP2Q5QJE6 756 aaKnown RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 FAM69BQ5VUD6 431 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 SUSD1Q6UWL2 747 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 CEP97Q8IW35 865 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 CNTN4Q8IWV2 1026 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 AVL9Q8NBF6 648 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 AGBL5Q8NDL9 886 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 PYROXD1Q8WU10 500 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 FCRL4Q96PJ5 515 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 OR2A14Q96R47 310 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 TCF12Q99081 682 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 RHOXF2Q9BQY4 288 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 TRIT1Q9H3H1 467 aaKnown RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 INTS10Q9NVR2 710 aaKnown RBP11.67□□□□□ -0.54
SCFD1-201ENST00000311943 ACTR10Q9NZ32 417 aa11.67□□□□□ -0.54
SCFD1-201ENST00000311943 CTAGE15A4D2H0 777 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 DXOO77932 396 aaKnown RBP11.66□□□□□ -0.54
SCFD1-201ENST00000311943 CHRM5P08912 532 aaPredicted RBP11.66□□□□□ -0.54
SCFD1-201ENST00000311943 CTAGE8P0CG41 777 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 PPARGP37231 505 aaPredicted RBP11.66□□□□□ -0.54
SCFD1-201ENST00000311943 ADARP55265 1226 aaKnown RBP11.66□□□□□ -0.54
SCFD1-201ENST00000311943 FOXL2P58012 376 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 KYNUQ16719 465 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 COL28A1Q2UY09 1125 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 C3orf62Q6ZUJ4 267 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 STRA8Q7Z7C7 330 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 CTAGE6Q86UF2 777 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 OOSP2Q86WS3 158 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 CTAGE4Q8IX94 777 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 SPACA3Q8IXA5 215 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 TBC1D21Q8IYX1 336 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 DTWD1Q8N5C7 304 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 GSDMBQ8TAX9 411 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 PANX3Q96QZ0 392 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 RUFY1Q96T51 708 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 ACAT2Q9BWD1 397 aa11.66□□□□□ -0.54
SCFD1-201ENST00000311943 MTO1Q9Y2Z2 717 aaKnown RBP11.66□□□□□ -0.54
SCFD1-201ENST00000311943 QSOX1O00391 747 aa11.65□□□□□ -0.54
SCFD1-201ENST00000311943 UGT2B7P16662 529 aa11.65□□□□□ -0.54
SCFD1-201ENST00000311943 MAGEA4P43358 317 aa11.65□□□□□ -0.54
SCFD1-201ENST00000311943 CYP4F2P78329 520 aa11.65□□□□□ -0.54
SCFD1-201ENST00000311943 CLN3Q13286 438 aa11.65□□□□□ -0.54
SCFD1-201ENST00000311943 HECTD2Q5U5R9 776 aa11.65□□□□□ -0.54
SCFD1-201ENST00000311943 PALM2Q8IXS6 379 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms