RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ZBP1Q9H171 429 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 RDH14Q9HBH5 336 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC25A37Q9NYZ2 338 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 PTTG2Q9NZH5 202 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 TRPS1Q9UHF7 1281 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC8A2Q9UPR5 921 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 HS3ST2Q9Y278 367 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 FADS3Q9Y5Q0 445 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 DENND4CQ5VZ89 1909 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 CXCL14O95715 111 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 CDH2P19022 906 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 PLCL1Q15111 1095 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 ZIK1Q3SY52 487 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 ENPP6Q6UWR7 440 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 MSRB3Q8IXL7 192 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 RIMKLAQ8IXN7 391 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 OR2T12Q8NG77 320 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 OR52E6Q96RD3 313 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 SMPD3Q9NY59 655 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 DLGAP4Q9Y2H0 992 aa17.94■□□□□ 0.46
SHKBP1-201ENST00000291842 PLXNB3Q9ULL4 1909 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 AREL1O15033 823 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 GSTA4O15217 222 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 ANXA6P08133 673 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 BCKDHAP12694 445 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 CDH1P12830 882 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 GGT1P19440 569 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC5A2P31639 672 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 CYBRD1Q53TN4 286 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 CARD16Q5EG05 197 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 ZNF648Q5T619 568 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 METTL3Q86U44 580 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 RNF175Q8N4F7 328 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 BEND7Q8N7W2 519 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 KREMEN2Q8NCW0 462 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 BPIFB1Q8TDL5 484 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 USP7Q93009 1102 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 AURKBQ96GD4 344 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC32A1Q9H598 525 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 LIN28AQ9H9Z2 209 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 NTN4Q9HB63 628 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 C1orf109Q9NX04 203 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 UTS2RQ9UKP6 389 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 GRXCR2A6NFK2 248 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 IFRD1O00458 451 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 WDR47O94967 919 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 OR56A5P0C7T3 313 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 SPINT3P49223 89 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 CYP4F3Q08477 520 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 MAD2L1Q13257 205 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 MAP7Q14244 749 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 ADRM1Q16186 407 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 ANKRD46Q86W74 232 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 DHRSXQ8N5I4 330 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 OR8J3Q8NGG0 315 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 OSCP1Q8WVF1 389 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 SELENOMQ8WWX9 145 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 SORCS1Q8WY21 1168 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 BBS2Q9BXC9 721 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 LINC00597Q9H2U6 94 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 ASAH2Q9NR71 780 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC25A13Q9UJS0 675 aa17.93■□□□□ 0.46
SHKBP1-201ENST00000291842 POP4O95707 220 aaKnown RBP17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 GSNP06396 782 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 CTSAP10619 480 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 ITPKAP23677 461 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 AOAHP28039 575 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 IST1P53990 364 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 PHC1P78364 1004 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 POM121L1PQ3SYA9 428 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 USP39Q53GS9 565 aaKnown RBP17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 GCNT7Q6ZNI0 430 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 ELMOD1Q8N336 334 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 NAT16Q8N8M0 369 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 GFM2Q969S9 779 aaKnown RBP17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 TSSK3Q96PN8 268 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 MCCC1Q96RQ3 725 aaPredicted RBP17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 BDH2Q9BUT1 245 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 ATG10Q9H0Y0 220 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 CLMPQ9H6B4 373 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 LIMD1Q9UGP4 676 aa17.92■□□□□ 0.46
SHKBP1-201ENST00000291842 GRM6O15303 877 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 GMNNO75496 209 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 LRATO95237 230 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 TCF3P15923 654 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 TACR1P25103 407 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 ALDH3B2P48448 385 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 DYNC1I2Q13409 638 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 NKG7Q16617 165 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 PTCHD3Q3KNS1 767 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 LILRA6Q6PI73 481 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 C10orf111Q8N326 155 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 TMBIM1Q969X1 311 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 P2RY13Q9BPV8 354 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 C19orf43Q9BQ61 176 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 MTG2Q9H4K7 406 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 PARVBQ9HBI1 364 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 CIDEBQ9UHD4 219 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 ADGRE2Q9UHX3 823 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms