RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 USP7Q93009 1102 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 TRIM43Q96BQ3 446 aaPredicted RBP19.61■□□□□ 0.73
VPS53-201ENST00000291074 LINC00597Q9H2U6 94 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.61■□□□□ 0.73
VPS53-201ENST00000291074 CHD7Q9P2D1 2997 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 CLDN9O95484 217 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 POP4O95707 220 aaKnown RBP19.61■□□□□ 0.73
VPS53-201ENST00000291074 PCNAP12004 261 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 AOAHP28039 575 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 TEAD2Q15562 447 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 MAPKAPK3Q16644 382 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 CCDC149Q6ZUS6 474 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 MSRB3Q8IXL7 192 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 TRIML2Q8N7C3 387 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 MAGEE2Q8TD90 523 aaPredicted RBP19.61■□□□□ 0.73
VPS53-201ENST00000291074 SORCS1Q8WY21 1168 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 CARS2Q9HA77 564 aaKnown RBP19.61■□□□□ 0.73
VPS53-201ENST00000291074 SLC6A13Q9NSD5 602 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 SLC25A37Q9NYZ2 338 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 DLGAP4Q9Y2H0 992 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 IGLV3-16A0A075B6K0 115 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 H3BSA7 217 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 WDR47O94967 919 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 PGRP06401 933 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 OR56A5P0C7T3 313 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 LINC00271P0C7V0 271 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 CBSLP0DN79 551 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 PABPC1P11940 636 aaKnown RBP19.6■□□□□ 0.73
VPS53-201ENST00000291074 ZNF23P17027 643 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 CBSP35520 551 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 PTPN5P54829 565 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 LRRC26Q2I0M4 334 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 CACHD1Q5VU97 1274 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 ZNF786Q8N393 782 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 OR10A6Q8NH74 314 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 CPEB1Q9BZB8 566 aaKnown RBP19.6■□□□□ 0.73
VPS53-201ENST00000291074 SLC32A1Q9H598 525 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 HIDE1A8MVS5 230 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 AREL1O15033 823 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 B3GALT4O96024 378 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 BCKDHAP12694 445 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 CREMQ03060 361 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 SLC36A3Q495N2 470 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 ZNF648Q5T619 568 aaPredicted RBP19.6■□□□□ 0.73
VPS53-201ENST00000291074 TMEM214Q6NUQ4 689 aaKnown RBP19.6■□□□□ 0.73
VPS53-201ENST00000291074 BEND7Q8N7W2 519 aaPredicted RBP19.6■□□□□ 0.73
VPS53-201ENST00000291074 FIG4Q92562 907 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 MPP4Q96JB8 637 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 TBCDQ9BTW9 1192 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 THUMPD3Q9BV44 507 aaKnown RBP19.6■□□□□ 0.73
VPS53-201ENST00000291074 MTG2Q9H4K7 406 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 C1orf109Q9NX04 203 aa19.6■□□□□ 0.73
VPS53-201ENST00000291074 KANSL1LA0AUZ9 987 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 IFRD1O00458 451 aaPredicted RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 ADH1AP07327 375 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 GGT1P19440 569 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 MYF6P23409 242 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 MAD2L1Q13257 205 aaPredicted RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 USP39Q53GS9 565 aaKnown RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 TMEM215Q68D42 235 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 RIMKLAQ8IXN7 391 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 CHCHD4Q8N4Q1 142 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 NAT16Q8N8M0 369 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 OR8J3Q8NGG0 315 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 OR2A12Q8NGT7 310 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 ITFG1Q8TB96 612 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 BPIFB1Q8TDL5 484 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 DMTF1Q9Y222 760 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 NUP214P35658 2090 aaPredicted RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 SNAP29O95721 258 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 ANXA6P08133 673 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 CDH1P12830 882 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 ERVFC1P60507 584 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 PTCHD3Q3KNS1 767 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 C1orf53Q5VUE5 145 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 NEK5Q6P3R8 708 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 GDPD4Q6W3E5 623 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 PRR23BQ6ZRT6 265 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 HSD11B1LQ7Z5J1 315 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 PHACTR4Q8IZ21 702 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 OR2T12Q8NG77 320 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 CYB5D2Q8WUJ1 264 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 SELENOMQ8WWX9 145 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 HAUS8Q9BT25 410 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 CLMPQ9H6B4 373 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 CLK4Q9HAZ1 481 aaKnown RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 VCX3AQ9NNX9 186 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 KIAA0100Q14667 2235 aaKnown RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 TYRP14679 529 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 ITPKAP23677 461 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 RPS9P46781 194 aaKnown RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 CYP4F3Q08477 520 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 POM121L1PQ3SYA9 428 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 OTUD3Q5T2D3 398 aaPredicted RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 ADIPOR2Q86V24 386 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 SLC22A15Q8IZD6 547 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 RNF175Q8N4F7 328 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 OSCP1Q8WVF1 389 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 OR52E6Q96RD3 313 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 P2RY13Q9BPV8 354 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms